SRR2936593.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936593.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	311236
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2953	0.9487976969245203	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCG	929	0.29848732151807633	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTC	753	0.24193859322186378	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGC	618	0.19856314822192805	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	526	0.16900358570345334	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCCGC	20	7.025349E-4	45.000004	21
GTAGCCG	20	7.025349E-4	45.000004	43
CTCGCGC	20	7.025349E-4	45.000004	33
CGCGTGA	20	7.025349E-4	45.000004	41
TCGACTC	20	7.025349E-4	45.000004	27
TCGGGCA	25	3.8842285E-5	45.0	5
CGCAATC	45	3.8198777E-10	45.0	20
ATTTGCG	25	3.8842285E-5	45.0	12
CGTTTTA	205	0.0	42.80488	1
CGTTTTT	1265	0.0	41.086956	1
GCGCAAT	50	1.0768417E-9	40.5	19
AACGGCT	45	1.920489E-8	40.0	7
TTAATCG	40	3.447385E-7	39.375004	20
CGTTGAT	40	3.447385E-7	39.375004	25
CGAATAT	35	6.2336167E-6	38.571426	14
AGCTACG	35	6.2336167E-6	38.571426	9
TGCACGG	35	6.2336167E-6	38.571426	2
TACGGCT	125	0.0	37.8	7
ATAGGCG	30	1.1380099E-4	37.499996	5
TATGCGG	30	1.1380099E-4	37.499996	2