SRR2936588.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936588.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	124404
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCG	314	0.2524034596958297	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTC	295	0.23713063888620944	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGC	246	0.197742837850873	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	229	0.1840776823896338	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	201	0.16157036751229864	No Hit
CCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	182	0.14629754670267836	No Hit
CTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGCT	149	0.11977106845439053	No Hit
TCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	126	0.1012829169480081	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTACG	20	7.0090254E-4	45.000004	1
TGTGCGG	20	7.0090254E-4	45.000004	2
GGTGCCT	40	6.730261E-9	45.000004	8
CGCACTT	20	7.0090254E-4	45.000004	35
CGCAAGC	20	7.0090254E-4	45.000004	20
CGTTTTA	20	7.0090254E-4	45.000004	1
CCGCACT	20	7.0090254E-4	45.000004	34
AAGCTTA	20	7.0090254E-4	45.000004	23
CCCGCAC	20	7.0090254E-4	45.000004	33
ACTGGGC	30	2.1498709E-6	45.000004	4
AGAACGG	25	3.8707105E-5	45.0	2
GGGTGCC	40	3.4251752E-7	39.375004	7
CATGGGT	70	0.0	38.571426	4
ATGAAAC	35	6.203485E-6	38.571426	3
ACGGGCA	30	1.13407994E-4	37.500004	5
AATGCGG	30	1.13407994E-4	37.500004	2
ATAAGGC	30	1.13407994E-4	37.500004	4
TAAGGCT	30	1.13407994E-4	37.500004	5
CTGGGTC	30	1.13407994E-4	37.500004	5
CAATGGG	55	2.7066562E-9	36.81818	3