SRR2936584.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936584.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	100362
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	191	0.19031107391243698	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCG	170	0.16938681971264025	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	147	0.14646977939857714	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGC	132	0.13152388354157948	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTC	125	0.12454913214164724	No Hit
GCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	117	0.11657798768458182	TruSeq Adapter, Index 27 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGATTC	20	7.0025166E-4	45.0	43
CGGGTCT	20	7.0025166E-4	45.0	6
CGGGTCC	20	7.0025166E-4	45.0	6
CGTGCGG	20	7.0025166E-4	45.0	2
CGACCCC	35	1.1971679E-7	45.0	20
GAATATA	20	7.0025166E-4	45.0	15
AAGGTAT	25	3.865324E-5	45.0	6
GCGTTTT	20	7.0025166E-4	45.0	9
TATGCGG	25	3.865324E-5	45.0	2
ACGGGTC	25	3.865324E-5	45.0	5
AATATAC	20	7.0025166E-4	45.0	16
AGTATAG	20	7.0025166E-4	45.0	2
GGGACGA	20	7.0025166E-4	45.0	7
CAGATAC	35	1.1971679E-7	45.0	45
TGATTCA	20	7.0025166E-4	45.0	44
GCGGGTC	25	3.865324E-5	45.0	5
GGTATGC	20	7.0025166E-4	45.0	8
GAACGGG	20	7.0025166E-4	45.0	3
CAAGCGG	35	1.1971679E-7	45.0	21
CCAAGCG	35	1.1971679E-7	45.0	20