SRR2936580.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936580.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	126476
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGC	328	0.25933773996647586	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCG	319	0.252221765394225	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTC	215	0.16999272589265949	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	209	0.16524874284449223	No Hit
GCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	155	0.12255289541098706	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGTGA	45	3.783498E-10	45.000004	43
AACACGT	45	3.783498E-10	45.000004	41
TTTAGGC	20	7.0094684E-4	45.0	4
TGCTTAC	20	7.0094684E-4	45.0	12
CAACGAC	20	7.0094684E-4	45.0	12
TATGCGG	25	3.8710758E-5	45.0	2
ATGTACG	20	7.0094684E-4	45.0	1
GTATGCG	20	7.0094684E-4	45.0	1
CGGGCTC	25	3.8710758E-5	45.0	6
AAACCGC	20	7.0094684E-4	45.0	22
CATAATG	20	7.0094684E-4	45.0	19
CGATGGA	25	3.8710758E-5	45.0	10
GCAATCG	20	7.0094684E-4	45.0	21
CAATCGG	20	7.0094684E-4	45.0	22
ACGACGC	20	7.0094684E-4	45.0	14
TAGTAAG	20	7.0094684E-4	45.0	2
CTCGTAA	55	6.002665E-11	40.909092	33
TCGTAAC	55	6.002665E-11	40.909092	34
CATGGTC	50	1.0659278E-9	40.5	12
GACACGA	50	1.0659278E-9	40.5	25