SRR2936579.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936579.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	169210
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	346	0.20447964068317478	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	175	0.1034217835825306	No Hit
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	173	0.10223982034158739	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATTCT	20	7.016224E-4	45.0	14
ACCGACT	20	7.016224E-4	45.0	42
ATGGGCT	70	0.0	41.785713	5
TCGACAC	50	1.0695658E-9	40.5	34
AGGCGAT	80	0.0	39.375	7
CGGTAGT	35	6.21676E-6	38.571426	12
GTTGCGG	35	6.21676E-6	38.571426	2
TACGGGA	65	9.094947E-12	38.07692	4
TATGGGT	30	1.13581234E-4	37.499996	4
TACGGTT	30	1.13581234E-4	37.499996	33
CACGACC	30	1.13581234E-4	37.499996	27
TCTCGTA	30	1.13581234E-4	37.499996	28
CGAGACA	30	1.13581234E-4	37.499996	22
ATTGCGG	30	1.13581234E-4	37.499996	2
ACGGTTA	30	1.13581234E-4	37.499996	34
GACTAAT	30	1.13581234E-4	37.499996	9
AACACGT	30	1.13581234E-4	37.499996	41
TAATGTC	55	2.7193892E-9	36.81818	25
TGTCCAT	55	2.7193892E-9	36.81818	28
GGCGATA	80	0.0	36.5625	8