SRR2936577.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936577.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	207373
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1422	0.68572089905629	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	243	0.11718015363620143	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGGGTG	35	1.2054988E-7	45.000004	5
TTAATCG	35	1.2054988E-7	45.000004	20
CATGCGG	20	7.019902E-4	45.000004	2
TATGCGG	20	7.019902E-4	45.000004	2
CGGGAGT	20	7.019902E-4	45.000004	6
CGTAAAG	20	7.019902E-4	45.000004	2
ATACCGG	20	7.019902E-4	45.000004	2
TAATCGT	35	1.2054988E-7	45.000004	21
CGTTTTT	680	0.0	43.345592	1
CGTTTTA	105	0.0	42.857143	1
GCGATGC	45	1.915214E-8	40.0	9
CGTTGAT	40	3.4399636E-7	39.375004	25
ATCGTTG	40	3.4399636E-7	39.375004	23
GCCTATG	40	3.4399636E-7	39.375004	9
CTGGGCG	35	6.2235504E-6	38.57143	5
CGGTAGT	35	6.2235504E-6	38.57143	12
AGTGCGG	30	1.1366976E-4	37.500004	2
CGAGGCA	30	1.1366976E-4	37.500004	5
CAGCTCG	30	1.1366976E-4	37.500004	25
CGATAGC	30	1.1366976E-4	37.500004	10