SRR2936576.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936576.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	130231
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGC	367	0.2818069430473543	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCG	364	0.2795033440578664	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTC	256	0.19657378043630166	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	226	0.17353779054142254	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	174	0.13360874139029877	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	167	0.12823367708149366	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACGT	20	7.0102385E-4	45.0	11
CTCACGT	20	7.0102385E-4	45.0	45
CTCACGA	20	7.0102385E-4	45.0	24
GGTACCA	20	7.0102385E-4	45.0	8
GCAAGAC	35	1.2008604E-7	45.0	45
ATCTATC	25	3.871714E-5	45.0	3
ATAGGGT	20	7.0102385E-4	45.0	4
CGACGGT	25	3.871714E-5	45.0	28
TTGCTAG	25	3.871714E-5	45.0	1
GGGTAAT	20	7.0102385E-4	45.0	7
GAATCTA	20	7.0102385E-4	45.0	1
CACGACG	20	7.0102385E-4	45.0	26
TATGCCA	25	3.871714E-5	45.0	10
AATCTAT	20	7.0102385E-4	45.0	2
GACGGTC	25	3.871714E-5	45.0	29
ATAAGGC	20	7.0102385E-4	45.0	4
ACTAACC	20	7.0102385E-4	45.0	14
TTACGGG	25	3.871714E-5	45.0	3
CGGTCTA	20	7.0102385E-4	45.0	31
GGTCTAA	20	7.0102385E-4	45.0	32