Basic Statistics
Measure | Value |
---|---|
Filename | SRR2936575.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 152818 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 205 | 0.1341465010666283 | No Hit |
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT | 161 | 0.10535408132549831 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAGGGA | 70 | 0.0 | 45.000004 | 4 |
CGAATAT | 35 | 1.2026976E-7 | 45.000004 | 14 |
GCTACGA | 35 | 1.2026976E-7 | 45.000004 | 10 |
TTGGGAC | 35 | 1.2026976E-7 | 45.000004 | 5 |
ATGGGCG | 20 | 7.0140796E-4 | 45.0 | 5 |
GGATGTC | 20 | 7.0140796E-4 | 45.0 | 8 |
GCAACGG | 20 | 7.0140796E-4 | 45.0 | 2 |
TACGGGA | 20 | 7.0140796E-4 | 45.0 | 4 |
TAACGGG | 20 | 7.0140796E-4 | 45.0 | 3 |
ACGGGTG | 20 | 7.0140796E-4 | 45.0 | 5 |
CGAATGG | 20 | 7.0140796E-4 | 45.0 | 2 |
CATACGA | 20 | 7.0140796E-4 | 45.0 | 18 |
CGTGTAT | 20 | 7.0140796E-4 | 45.0 | 30 |
GCATGTT | 20 | 7.0140796E-4 | 45.0 | 18 |
ACATACG | 20 | 7.0140796E-4 | 45.0 | 17 |
GTAGTAG | 20 | 7.0140796E-4 | 45.0 | 1 |
ACGAAAA | 20 | 7.0140796E-4 | 45.0 | 21 |
AGGCGAT | 30 | 2.1531214E-6 | 44.999996 | 7 |
ATAGGAT | 45 | 1.909575E-8 | 40.0 | 5 |
CCTCGTC | 45 | 1.909575E-8 | 40.0 | 36 |