FastQCFastQC Report
Sat 14 Jan 2017
SRR2936575.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936575.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences152818
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2050.1341465010666283No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT1610.10535408132549831No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAGGGA700.045.0000044
CGAATAT351.2026976E-745.00000414
GCTACGA351.2026976E-745.00000410
TTGGGAC351.2026976E-745.0000045
ATGGGCG207.0140796E-445.05
GGATGTC207.0140796E-445.08
GCAACGG207.0140796E-445.02
TACGGGA207.0140796E-445.04
TAACGGG207.0140796E-445.03
ACGGGTG207.0140796E-445.05
CGAATGG207.0140796E-445.02
CATACGA207.0140796E-445.018
CGTGTAT207.0140796E-445.030
GCATGTT207.0140796E-445.018
ACATACG207.0140796E-445.017
GTAGTAG207.0140796E-445.01
ACGAAAA207.0140796E-445.021
AGGCGAT302.1531214E-644.9999967
ATAGGAT451.909575E-840.05
CCTCGTC451.909575E-840.036