SRR2936574.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936574.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	217374
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	438	0.20149603908471114	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC	218	0.1002879829234407	TruSeq Adapter, Index 16 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAACACG	30	2.157356E-6	45.000004	40
CACAACG	30	2.157356E-6	45.000004	12
GATCGAA	20	7.0206536E-4	45.0	44
CCCACCG	20	7.0206536E-4	45.0	15
AGACGGC	20	7.0206536E-4	45.0	35
TATAGCG	20	7.0206536E-4	45.0	1
CGTTTTA	35	1.2058626E-7	45.0	1
AATACGG	25	3.880338E-5	45.0	2
AGAGACG	20	7.0206536E-4	45.0	33
CGAGATA	80	0.0	42.1875	19
AGGCGAT	70	0.0	41.785713	7
ACAAGCG	85	0.0	39.705883	14
AACGAGC	40	3.4410004E-7	39.375	15
TGACGGG	70	0.0	38.571426	3
AGTTACG	35	6.22494E-6	38.571426	1
CGTCATA	35	6.22494E-6	38.571426	38
AACACGT	35	6.22494E-6	38.571426	41
TACGGGA	65	9.094947E-12	38.076927	4
GTTGATC	30	1.1368787E-4	37.500004	16
CACGGGC	30	1.1368787E-4	37.500004	4