SRR2936569.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936569.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	178300
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	403	0.22602355580482333	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGC	282	0.15816040381379698	TruSeq Adapter, Index 21 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGC	269	0.15086932136848008	TruSeq Adapter, Index 21 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGCT	234	0.13123948401570387	TruSeq Adapter, Index 14 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGC	184	0.10319685922602355	TruSeq Adapter, Index 21 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGAC	20	7.017245E-4	45.0	9
GGCGTAG	20	7.017245E-4	45.0	1
AGGACAC	20	7.017245E-4	45.0	7
GTTAGCG	20	7.017245E-4	45.0	1
TTCCGCG	20	7.017245E-4	45.0	1
GCGTTTG	20	7.017245E-4	45.0	1
CGCGACC	20	7.017245E-4	45.0	10
AGGCGAT	45	3.8016879E-10	45.0	7
CGAATAT	35	1.2042256E-7	45.0	14
GCCTATC	20	7.017245E-4	45.0	41
CGAGCGG	20	7.017245E-4	45.0	2
GGCGCGA	20	7.017245E-4	45.0	8
GCTACGA	35	1.2042256E-7	45.0	10
TAGGATC	20	7.017245E-4	45.0	6
AGCTACG	35	1.2042256E-7	45.0	9
TCCGCGG	25	3.8775157E-5	44.999996	2
CTACGGG	30	2.1551605E-6	44.999996	3
TTTTGCG	30	2.1551605E-6	44.999996	1
GCGCTAG	25	3.8775157E-5	44.999996	1
CTAGGGC	65	0.0	41.538464	4