Basic Statistics
Measure | Value |
---|---|
Filename | SRR2936568.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 195238 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1682 | 0.8615126153720075 | No Hit |
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT | 288 | 0.14751226707915469 | No Hit |
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 277 | 0.14187811798932584 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGAGAC | 35 | 1.2050077E-7 | 45.0 | 21 |
TAAAGCG | 20 | 7.0188876E-4 | 45.0 | 1 |
GGATCGA | 20 | 7.0188876E-4 | 45.0 | 8 |
TATGCGG | 25 | 3.878875E-5 | 45.0 | 2 |
CGTTTTA | 140 | 0.0 | 45.0 | 1 |
ACACGAC | 30 | 2.1562191E-6 | 44.999996 | 26 |
CGTTTTT | 840 | 0.0 | 43.125 | 1 |
AGCGACT | 90 | 0.0 | 42.5 | 19 |
CACAACG | 90 | 0.0 | 42.5 | 12 |
TACGGCT | 40 | 3.4385994E-7 | 39.375 | 7 |
ATGCATA | 40 | 3.4385994E-7 | 39.375 | 26 |
GAGCGAC | 105 | 0.0 | 38.57143 | 18 |
TGCGGGC | 35 | 6.221677E-6 | 38.571426 | 4 |
AGACACG | 35 | 6.221677E-6 | 38.571426 | 24 |
GTGAAAC | 35 | 6.221677E-6 | 38.571426 | 37 |
AACGAGC | 100 | 0.0 | 38.25 | 15 |
GGCGATA | 65 | 9.094947E-12 | 38.076927 | 8 |
TCGCAGG | 30 | 1.13645365E-4 | 37.499996 | 2 |
TTGCCGG | 30 | 1.13645365E-4 | 37.499996 | 2 |
CACCGGG | 30 | 1.13645365E-4 | 37.499996 | 3 |