FastQCFastQC Report
Sat 14 Jan 2017
SRR2936568.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936568.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences195238
Sequences flagged as poor quality0
Sequence length51
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT16820.8615126153720075No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT2880.14751226707915469No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2770.14187811798932584No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGAGAC351.2050077E-745.021
TAAAGCG207.0188876E-445.01
GGATCGA207.0188876E-445.08
TATGCGG253.878875E-545.02
CGTTTTA1400.045.01
ACACGAC302.1562191E-644.99999626
CGTTTTT8400.043.1251
AGCGACT900.042.519
CACAACG900.042.512
TACGGCT403.4385994E-739.3757
ATGCATA403.4385994E-739.37526
GAGCGAC1050.038.5714318
TGCGGGC356.221677E-638.5714264
AGACACG356.221677E-638.57142624
GTGAAAC356.221677E-638.57142637
AACGAGC1000.038.2515
GGCGATA659.094947E-1238.0769278
TCGCAGG301.13645365E-437.4999962
TTGCCGG301.13645365E-437.4999962
CACCGGG301.13645365E-437.4999963