##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936566.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 189188 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.993012241791234 33.0 31.0 34.0 30.0 34.0 2 32.11044569423008 33.0 31.0 34.0 30.0 34.0 3 31.97745628686809 33.0 31.0 34.0 30.0 34.0 4 35.73790620969618 37.0 35.0 37.0 35.0 37.0 5 35.83747383554982 37.0 35.0 37.0 35.0 37.0 6 35.823704463285196 37.0 35.0 37.0 35.0 37.0 7 26.905977123284774 35.0 11.0 37.0 0.0 37.0 8 31.211525043871703 36.0 19.0 37.0 17.0 37.0 9 35.978164577034484 39.0 32.0 39.0 32.0 39.0 10 36.62545721715965 38.0 35.0 39.0 32.0 39.0 11 36.98523162145591 39.0 37.0 39.0 34.0 39.0 12 37.04404613400427 39.0 37.0 39.0 34.0 39.0 13 37.00533860498552 39.0 37.0 39.0 33.0 39.0 14 38.18868532887921 40.0 37.0 41.0 33.0 41.0 15 38.26213607628391 40.0 37.0 41.0 34.0 41.0 16 38.22314311689959 40.0 37.0 41.0 34.0 41.0 17 38.1053819481151 40.0 37.0 41.0 33.0 41.0 18 38.01088335412394 40.0 37.0 41.0 33.0 41.0 19 37.91448189102903 40.0 37.0 41.0 33.0 41.0 20 37.96498192274351 40.0 36.0 41.0 34.0 41.0 21 37.91100915491469 40.0 36.0 41.0 33.0 41.0 22 37.91297545298856 40.0 36.0 41.0 33.0 41.0 23 37.88562170962217 40.0 36.0 41.0 33.0 41.0 24 37.848896335919825 40.0 36.0 41.0 33.0 41.0 25 37.76210436179885 40.0 36.0 41.0 33.0 41.0 26 37.65031608770112 40.0 36.0 41.0 33.0 41.0 27 37.553164048459735 40.0 36.0 41.0 33.0 41.0 28 37.527174027951034 40.0 36.0 41.0 33.0 41.0 29 37.50483117322452 40.0 36.0 41.0 33.0 41.0 30 37.41557075501618 39.0 36.0 41.0 33.0 41.0 31 37.31630970251813 39.0 35.0 41.0 32.0 41.0 32 37.200033828784065 39.0 35.0 41.0 32.0 41.0 33 37.0870562614965 39.0 35.0 41.0 32.0 41.0 34 36.941433917584625 39.0 35.0 41.0 31.0 41.0 35 36.856962386620715 39.0 35.0 41.0 31.0 41.0 36 36.720251813011394 39.0 35.0 41.0 31.0 41.0 37 36.649496796837006 39.0 35.0 41.0 30.0 41.0 38 36.565500983149036 39.0 35.0 41.0 30.0 41.0 39 36.50624775355731 39.0 35.0 41.0 30.0 41.0 40 36.346491320802585 39.0 35.0 41.0 30.0 41.0 41 36.294194134934564 39.0 35.0 40.0 30.0 41.0 42 36.20108040679113 39.0 35.0 40.0 30.0 41.0 43 36.15914857179102 39.0 35.0 40.0 30.0 41.0 44 35.95367042307123 38.0 35.0 40.0 29.0 41.0 45 35.84665517897541 38.0 35.0 40.0 29.0 41.0 46 35.681729285155505 38.0 35.0 40.0 28.0 41.0 47 35.56962386620716 38.0 35.0 40.0 27.0 41.0 48 35.494925682390004 38.0 35.0 40.0 27.0 41.0 49 35.34781275768019 38.0 34.0 40.0 27.0 41.0 50 35.133718840518426 38.0 34.0 40.0 26.0 41.0 51 32.93094170877646 36.0 31.0 39.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 8.0 9 11.0 10 18.0 11 11.0 12 8.0 13 5.0 14 12.0 15 14.0 16 21.0 17 32.0 18 73.0 19 119.0 20 181.0 21 314.0 22 468.0 23 638.0 24 958.0 25 1320.0 26 1779.0 27 2013.0 28 2478.0 29 2939.0 30 3644.0 31 4703.0 32 6011.0 33 8506.0 34 13836.0 35 16820.0 36 17586.0 37 27841.0 38 36571.0 39 40242.0 40 8.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.66120472757257 20.221155675835675 24.939742478381294 13.177897118210458 2 31.24141066029558 25.239972936972748 26.10894982768463 17.40966657504704 3 30.850265344525024 24.654840687570037 27.906103981225023 16.588789986679917 4 27.770260270207416 25.167029621329046 28.236991775376875 18.825718333086666 5 24.514768378544094 29.645643486901918 26.06719242235237 19.77239571220162 6 25.701418694631794 34.67926084106814 25.479417299194452 14.139903165105608 7 61.65930185846883 27.611687844895027 6.684884876419223 4.044125420216927 8 83.1437511892932 5.088589128274521 7.489904222255111 4.277755460177178 9 77.20891388460156 6.97401526523881 9.781275768019112 6.035795082140516 10 41.45823202317272 26.130621392477327 17.950398545362283 14.460748038987672 11 30.5389348161617 25.636404000253716 25.903334249529568 17.921326934055017 12 30.59496373977208 21.844937311034528 27.79774615726156 19.762352791931832 13 24.388967587796266 25.546017717825652 29.031968200942977 21.0330464934351 14 19.336321542592554 28.404021396705918 29.651986383914412 22.607670676787112 15 19.001733725183414 26.196693236357486 34.834661817874284 19.966911220584816 16 21.05313233397467 25.039114531577056 32.49571854451656 21.412034589931707 17 21.171004503456878 25.134786561515533 29.841744719538237 23.852464215489356 18 21.933737869209462 26.18559316658562 30.859779690043766 21.020889274161153 19 23.67433452438844 28.04036196798951 27.0212698479819 21.26403365964015 20 24.52533987356492 26.769139691735205 28.98386789859822 19.721652536101654 21 22.609256401040234 28.760809353658797 28.083705097574903 20.546229147726073 22 21.982366746305264 25.737890352453647 27.837389263589657 24.442353637651436 23 22.025181301139607 26.597352897646786 28.286677801974758 23.090787999238852 24 21.79313698543248 24.763198511533503 30.513563228111718 22.9301012749223 25 20.400871091189714 27.575744761824218 28.563650971520392 23.459733175465676 26 19.190963486056198 28.08899084508531 29.09063999830856 23.62940567054993 27 19.722709685603736 29.086939975051273 28.048819164006172 23.141531175338816 28 18.805632492547094 28.360678267120537 30.564306404211685 22.269382836120684 29 20.63555828065205 24.97145696344377 30.86929403556251 23.52369072034167 30 20.728058862084275 27.55618749603569 28.95479628729095 22.760957354589088 31 22.152567816140557 28.703194705795294 26.793982705034146 22.350254773030002 32 23.3064464976637 27.387572150453515 27.186185170306786 22.119796181576 33 22.081738799501025 27.311457386303573 26.73953950567689 23.86726430851851 34 20.249170137640863 27.195170941074487 29.661500729433154 22.894158191851492 35 19.40450768547688 27.1031989343933 29.238112353849083 24.254181026280737 36 21.861323128316805 28.858595682601436 26.450409116857305 22.829672072224454 37 20.824788041524833 29.01346808465653 29.417299194452077 20.744444679366556 38 20.335327822060595 27.139142017464106 28.204220140812314 24.32131001966298 39 20.49707169587923 26.53762395077912 28.746537835380682 24.218766517960972 40 21.357591390574456 25.430259847347614 29.22965515783242 23.982493604245512 41 18.552445186798316 26.24056494069391 29.045182569719007 26.16180730278876 42 20.330042074550185 25.5555320633444 28.870224327124344 25.244201534981077 43 20.8358881112967 25.755333319238005 28.230120303613337 25.178658265851954 44 20.9268029684758 25.226758568196715 28.203162991310233 25.64327547201725 45 19.868596316891136 26.756982472461253 28.26342051292894 25.111000697718673 46 20.067340423282662 28.310463665771614 27.38440070194727 24.237795208998456 47 19.414550605746665 25.904919973782693 30.449605683235724 24.230923737234917 48 19.98012558936085 25.027485887054148 30.187961181470286 24.80442734211472 49 20.620758187622894 25.04545742858955 29.386641858891682 24.94714252489587 50 19.198892107321818 24.81869886039284 30.216504218026515 25.765904814258832 51 18.51333065522126 25.211429900416515 28.25179186840603 28.02344757595619 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 75.0 1 223.0 2 371.0 3 854.5 4 1338.0 5 925.0 6 512.0 7 466.5 8 421.0 9 425.0 10 429.0 11 402.0 12 375.0 13 386.5 14 398.0 15 434.5 16 471.0 17 443.0 18 415.0 19 443.0 20 471.0 21 491.5 22 512.0 23 631.5 24 751.0 25 952.0 26 1534.0 27 1915.0 28 2406.0 29 2897.0 30 3161.0 31 3425.0 32 4106.5 33 4788.0 34 5455.0 35 6122.0 36 6686.5 37 7251.0 38 7750.5 39 8250.0 40 9194.0 41 10138.0 42 11055.0 43 11972.0 44 13080.5 45 14189.0 46 15965.5 47 17742.0 48 17634.5 49 17527.0 50 16793.0 51 16059.0 52 14214.0 53 12369.0 54 11104.0 55 9839.0 56 8930.5 57 8022.0 58 7549.5 59 7077.0 60 6679.5 61 6282.0 62 5833.0 63 5384.0 64 4533.5 65 3683.0 66 3010.5 67 2338.0 68 1952.5 69 1567.0 70 1241.0 71 915.0 72 814.5 73 714.0 74 563.5 75 324.0 76 235.0 77 222.5 78 210.0 79 139.0 80 68.0 81 54.0 82 40.0 83 31.0 84 22.0 85 16.0 86 10.0 87 8.0 88 6.0 89 5.0 90 4.0 91 7.0 92 10.0 93 8.0 94 6.0 95 6.5 96 7.0 97 3.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 189188.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.46250290716113 #Duplication Level Percentage of deduplicated Percentage of total 1 72.3826582450848 36.52610102120642 2 9.913165530172098 10.00486288770958 3 5.105322146455918 7.7288200097257755 4 3.213608605934911 6.486669344778738 5 2.340026605494977 5.904179969131235 6 1.7513538426085953 5.302661902446244 7 1.2852339502875278 4.539928536693659 8 1.0767893242832753 4.346998752563588 9 0.7667410363573516 3.4822504598600332 >10 2.1378667420838178 13.658371566906993 >50 0.015711906482732615 0.5560606380954395 >100 0.010474604321821743 1.1163498741992093 >500 0.0010474604321821742 0.3467450366830877 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 656 0.3467450366830877 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCG 450 0.2378586379685815 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGC 299 0.15804385056134637 No Hit GAATCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTC 275 0.14535805653635536 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 239 0.12632936549886883 No Hit GCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGC 201 0.10624352495929973 Illumina PCR Primer Index 3 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGC 194 0.1025435017020107 RNA PCR Primer, Index 7 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10148635219992812 0.0 2 0.0 0.0 0.0 0.5143032327631774 0.0 3 0.0 0.0 0.0 0.6919043491130515 0.0 4 0.0 0.0 0.0 0.9271201133264266 0.0 5 0.0 0.0 0.0 1.7479967016935536 0.0 6 0.0 0.0 0.0 2.253314163689029 0.0 7 0.0 0.0 0.0 2.7644459479459584 0.0 8 0.0 0.0 0.0 3.834809818804575 0.0 9 0.0 0.0 0.0 4.299955599720913 0.0 10 0.0 0.0 0.0 5.624563925830391 0.0 11 0.0 0.0 0.0 6.938600756919043 0.0 12 0.0 0.0 0.0 8.088250840433854 0.0 13 0.0 0.0 0.0 8.506882043258557 0.0 14 0.0 0.0 0.0 8.66281159481574 0.0 15 0.0 0.0 0.0 8.976784996934267 0.0 16 0.0 0.0 0.0 9.635917711482758 0.0 17 0.0 0.0 0.0 10.416622618770747 0.0 18 0.0 0.0 0.0 11.302513901515953 0.0 19 0.0 0.0 0.0 11.765016808677084 0.0 20 0.0 0.0 0.0 12.229105440091338 0.0 21 0.0 0.0 0.0 12.840666427046113 0.0 22 0.0 0.0 0.0 13.504027739602934 0.0 23 0.0 0.0 0.0 14.165803327906632 0.0 24 0.0 0.0 0.0 14.668477916146902 0.0 25 0.0 0.0 0.0 15.137323720320527 0.0 26 0.0 0.0 0.0 15.544854853373364 0.0 27 0.0 0.0 0.0 15.953443135928284 0.0 28 0.0 0.0 0.0 16.380002960018604 0.0 29 0.0 0.0 0.0 16.79123411632873 0.0 30 0.0 0.0 0.0 17.312408820855445 0.0 31 0.0 0.0 0.0 17.78072605027803 0.0 32 0.0 0.0 0.0 18.211514472376685 0.0 33 0.0 0.0 0.0 18.625388502442014 0.0 34 0.0 0.0 0.0 19.069391293316702 0.0 35 5.285747510412923E-4 0.0 0.0 19.560965811785103 0.0 36 5.285747510412923E-4 0.0 0.0 20.015011522929573 0.0 37 5.285747510412923E-4 0.0 0.0 20.493371672621944 0.0 38 5.285747510412923E-4 0.0 0.0 20.959574603040362 0.0 39 5.285747510412923E-4 0.0 0.0 21.439520476985855 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGCTC 20 7.018332E-4 45.000004 31 GGATGCG 20 7.018332E-4 45.000004 8 AAGACGG 20 7.018332E-4 45.000004 2 TATGCGG 20 7.018332E-4 45.000004 2 CCACTGG 20 7.018332E-4 45.000004 2 TCGGACG 20 7.018332E-4 45.000004 1 CGCTCGT 20 7.018332E-4 45.000004 42 GACGAGG 20 7.018332E-4 45.000004 2 TATACTG 35 1.2047349E-7 45.000004 18 TAGTCCT 20 7.018332E-4 45.000004 27 ATCTACC 45 3.8198777E-10 45.0 15 TTTACGG 25 3.8784157E-5 45.0 2 TTACTAT 25 3.8784157E-5 45.0 15 AATGGGT 50 2.1827873E-11 45.0 4 CAAGGCG 25 3.8784157E-5 45.0 5 TCAACGG 25 3.8784157E-5 45.0 2 AGACCTA 30 2.1558608E-6 44.999996 32 GACCTAT 30 2.1558608E-6 44.999996 33 CTACCTT 60 3.6379788E-12 41.249996 17 AATATAC 55 6.002665E-11 40.909092 16 >>END_MODULE