SRR2936564.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936564.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	346120
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7267	2.0995608459493815	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTC	1629	0.4706460187218306	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTT	1490	0.4304865364613429	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1230	0.3553680804345314	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTC	1060	0.30625216687853923	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCT	825	0.23835663931584422	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	738	0.21322084826071883	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCG	641	0.18519588581994684	No Hit
CGCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTG	593	0.1713278631688432	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGC	568	0.1641049347047267	No Hit
GAACTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCT	527	0.15225933202357564	No Hit
CGTCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCT	450	0.13001271235409684	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	20	7.026448E-4	45.0	25
CTCACGA	20	7.026448E-4	45.0	24
CACGGGC	20	7.026448E-4	45.0	4
CGTTCTG	180	0.0	45.0	1
CGTTAAG	20	7.026448E-4	45.0	2
GCGATCG	20	7.026448E-4	45.0	9
CGGTCTA	20	7.026448E-4	45.0	31
TATCCGG	20	7.026448E-4	45.0	2
CGTTTCA	30	2.1610904E-6	44.999996	1
CGTTTTA	645	0.0	43.95349	1
CGTTTTT	4030	0.0	43.380898	1
AGGCGAT	120	0.0	43.124996	7
CGTTCTA	70	0.0	41.785713	1
CGGTTTT	315	0.0	41.428574	1
CTGGGTC	60	3.6379788E-12	41.249996	5
CGTTTCT	230	0.0	41.08696	1
GTTTTAT	700	0.0	40.17857	2
ATTGGGC	45	1.9215804E-8	40.0	4
CGGTTTA	75	0.0	39.000004	1
CGCTGTA	35	6.235643E-6	38.571426	1