SRR2936563.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936563.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	153885
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	627	0.4074471196023004	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	166	0.1078727621275628	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAGAC	60	0.0	45.000004	21
GTTGATC	25	3.875017E-5	45.000004	16
ACACGTG	60	0.0	45.000004	42
ACTAAGG	25	3.875017E-5	45.000004	3
CGCATAG	20	7.0142304E-4	45.0	2
AGGCGAT	70	0.0	45.0	7
TTATCGT	20	7.0142304E-4	45.0	23
TACGCGG	20	7.0142304E-4	45.0	2
AGTAGCG	20	7.0142304E-4	45.0	1
TATCGTA	20	7.0142304E-4	45.0	24
GTTATCG	20	7.0142304E-4	45.0	22
CGACCAA	65	0.0	41.53846	29
CACGACC	65	0.0	41.53846	27
TCAAGCG	65	0.0	41.53846	17
ACGACCA	65	0.0	41.53846	28
AGCGACT	55	6.002665E-11	40.909092	19
GCCCTAG	50	1.0677468E-9	40.500004	20
CGAATAT	50	1.0677468E-9	40.500004	14
ATGGGCG	35	6.2130803E-6	38.571426	5
ACACGAC	70	0.0	38.571426	26