SRR2936562.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936562.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	200698
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCG	744	0.37070623523901586	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTC	723	0.3602427527927533	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	599	0.2984583802529173	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGC	551	0.2745418489471743	No Hit
GCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	325	0.1619348473826346	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTAGGGC	35	1.205226E-7	45.000004	4
GCCCTAC	45	3.8198777E-10	45.000004	26
AGCTACG	35	1.205226E-7	45.000004	9
CCACGGG	35	1.205226E-7	45.000004	3
CACGGGT	25	3.879265E-5	45.0	4
CGTGCGG	20	7.0193585E-4	45.0	2
ATAGCGG	20	7.0193585E-4	45.0	2
CTCGGTT	20	7.0193585E-4	45.0	11
GCGATCT	20	7.0193585E-4	45.0	9
CGGTAGT	20	7.0193585E-4	45.0	12
CGTTTTA	20	7.0193585E-4	45.0	1
GACCTTA	25	3.879265E-5	45.0	9
ACGACGG	20	7.0193585E-4	45.0	2
TAGTACG	20	7.0193585E-4	45.0	1
GGTATGC	30	2.156521E-6	44.999996	8
AGGCGAT	95	0.0	42.63158	7
CCCTACA	50	1.0713848E-9	40.5	27
GGCGATC	50	1.0713848E-9	40.5	8
AATGGGC	40	3.439236E-7	39.375	4
CTACGAA	40	3.439236E-7	39.375	11