SRR2936561.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936561.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	258813
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3382	1.3067349785366267	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	633	0.24457813170126694	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	344	0.13291449811253683	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGGCG	20	7.023149E-4	45.0	5
TACGGGT	20	7.023149E-4	45.0	4
CGACACC	20	7.023149E-4	45.0	35
AGGCGAT	135	0.0	45.0	7
AATGCGG	20	7.023149E-4	45.0	2
TTAAGCC	20	7.023149E-4	45.0	10
TCGACAC	20	7.023149E-4	45.0	34
CGTTTGG	20	7.023149E-4	45.0	2
CGAAGGC	20	7.023149E-4	45.0	4
CGTTTTA	205	0.0	43.90244	1
CGTTTTT	1590	0.0	43.301888	1
CGGGAAT	65	0.0	41.538464	6
GGTATGC	45	1.9183062E-8	40.000004	8
TACACGC	45	1.9183062E-8	40.000004	35
ACACGCG	40	3.444402E-7	39.375	36
TACGAAT	40	3.444402E-7	39.375	12
CGAATAT	40	3.444402E-7	39.375	14
CTGTTAT	35	6.2295458E-6	38.571426	23
CGGGATC	35	6.2295458E-6	38.571426	6
TGCGGGC	65	9.094947E-12	38.076927	4