SRR2936559.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936559.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	197419
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCG	1335	0.6762267056362357	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGC	1105	0.5597232282607044	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTC	1084	0.5490859542394602	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	856	0.43359555058023797	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTT	398	0.20160166954548445	No Hit
GAACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT	312	0.1580394997441989	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCG	250	0.12663421453862092	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCT	234	0.11852962480814917	No Hit
GCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	208	0.1053596664961326	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGC	199	0.10080083477274222	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCACAC	25	3.8790356E-5	45.0	15
CGACCCG	20	7.01908E-4	45.0	32
ATTCGGC	20	7.01908E-4	45.0	17
AAGGTAT	25	3.8790356E-5	45.0	6
CCGCTGA	20	7.01908E-4	45.0	36
TACGAAT	25	3.8790356E-5	45.0	12
TGTTATG	20	7.01908E-4	45.0	1
CGAATAT	20	7.01908E-4	45.0	14
GCTACGA	20	7.01908E-4	45.0	10
ACGGCTG	255	0.0	43.23529	8
TACGGCT	215	0.0	42.90698	7
AAACGGC	65	0.0	41.538464	6
CGGCTGT	275	0.0	40.090908	9
AACGGCT	45	1.9144863E-8	40.0	7
TGTATGG	35	6.222035E-6	38.571426	2
CTATCTC	130	0.0	38.076927	5
AGGCGAT	95	0.0	37.894737	7
CGTTTTT	475	0.0	37.894737	1
GTCATAC	30	1.1365003E-4	37.499996	39
CGGGTAT	30	1.1365003E-4	37.499996	6