SRR2936557.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936557.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	51482
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	106	0.205897206790723	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	79	0.15345169185346336	No Hit
CCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGC	77	0.14956683889514782	No Hit
GCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGC	71	0.13791228002020123	No Hit
CTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGCT	64	0.12431529466609689	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCG	59	0.11460316227030808	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGACTAT	30	2.125198E-6	45.000004	23
TAGGGAC	30	2.125198E-6	45.000004	5
CCTATGC	35	1.1819611E-7	45.0	35
TCAAGGG	20	6.9705734E-4	45.0	4
CTGGGTT	25	3.838919E-5	45.0	5
AAGGGTG	20	6.9705734E-4	45.0	6
GCTACGA	35	1.1819611E-7	45.0	10
TACGAAT	35	1.1819611E-7	45.0	12
CTACGAA	35	1.1819611E-7	45.0	11
CTATGAA	35	1.1819611E-7	45.0	26
CCCCACG	20	6.9705734E-4	45.0	38
TTGCTAG	20	6.9705734E-4	45.0	1
GCCCCCC	20	6.9705734E-4	45.0	35
AGGGATA	55	5.820766E-11	40.909092	6
TCAGGGG	40	3.3731703E-7	39.375	4
AGCTACG	40	3.3731703E-7	39.375	9
CGAATAT	40	3.3731703E-7	39.375	14
AGACCTA	40	3.3731703E-7	39.375	32
ACCTATG	40	3.3731703E-7	39.375	34
ACTATGA	40	3.3731703E-7	39.375	25