SRR2936556.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936556.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	158269
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	295	0.18639152329262204	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	212	0.13394916250181652	No Hit
GCTGTCTCTTATACACATCTGACGCCTGAACACTCGTATGCCGTCTTCTGC	184	0.1162577636808219	TruSeq Adapter, Index 19 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATGCGT	20	7.0148404E-4	45.000004	11
ACCGATT	20	7.0148404E-4	45.000004	10
TCGGGAA	20	7.0148404E-4	45.000004	5
AAACACG	20	7.0148404E-4	45.000004	40
ATGCGTA	20	7.0148404E-4	45.000004	12
CAATGCG	20	7.0148404E-4	45.000004	1
CACGTGA	20	7.0148404E-4	45.000004	43
AGTAGCG	20	7.0148404E-4	45.000004	1
TGTCACT	25	3.8755246E-5	45.0	3
CGGGAAA	25	3.8755246E-5	45.0	6
TGGGACC	25	3.8755246E-5	45.0	6
CTTAGGA	25	3.8755246E-5	45.0	4
TGGTCAA	25	3.8755246E-5	45.0	14
AAGCTAC	35	1.2030614E-7	45.0	8
TAACGGG	55	6.002665E-11	40.90909	3
TGCGAGG	55	6.002665E-11	40.90909	2
CTCATGC	55	6.002665E-11	40.90909	23
CGAATAT	40	3.4330878E-7	39.375004	14
ACTAATC	40	3.4330878E-7	39.375004	10
CGGGAAT	40	3.4330878E-7	39.375004	6