SRR2936553.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936553.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	210139
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	683	0.3250229609924859	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTC	300	0.14276264758088691	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCG	284	0.13514863970990632	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGC	268	0.12753463183892566	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGACGG	20	7.020117E-4	45.0	2
GAATCTA	20	7.020117E-4	45.0	1
TATGCGG	25	3.8798928E-5	45.0	2
CCGCTAT	20	7.020117E-4	45.0	12
CGCTATA	20	7.020117E-4	45.0	13
TAGGGTC	20	7.020117E-4	45.0	5
CGAATGA	20	7.020117E-4	45.0	45
CGTAAGG	45	3.8198777E-10	45.0	3
ACGTAAG	20	7.020117E-4	45.0	2
GGCGATT	90	0.0	40.0	8
CATGCGG	40	3.4402728E-7	39.375	2
GACACGA	40	3.4402728E-7	39.375	25
CGACCAA	40	3.4402728E-7	39.375	29
AGACACG	40	3.4402728E-7	39.375	24
ACGACCA	40	3.4402728E-7	39.375	28
ACGTGAG	35	6.2239487E-6	38.571426	44
TATACTG	30	1.1367491E-4	37.500004	18
GCGATTG	55	2.7266651E-9	36.81818	9
GCGATGT	55	2.7266651E-9	36.81818	9
ACACGAC	50	4.8465154E-8	36.0	26