SRR2936549.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936549.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	58252
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCG	751	1.289226120991554	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGC	563	0.9664904209297535	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTC	469	0.8051225708988533	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCT	195	0.33475245485133553	No Hit
GCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	178	0.3055689075053217	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCG	173	0.29698551122708233	No Hit
CCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	149	0.2557852090915333	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTT	138	0.2369017372794067	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGC	116	0.19913479365515346	No Hit
GAATCTATCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTC	108	0.18540135960997048	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTC	104	0.17853464258737897	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	99	0.1699512463091396	No Hit
GAACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCT	89	0.15278445375266084	No Hit
CTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGCT	84	0.14420105747442147	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACAAGC	30	2.1300912E-6	45.000004	13
AGAAGGG	30	2.1300912E-6	45.000004	3
TGTCACT	30	2.1300912E-6	45.000004	3
GAATGAC	30	2.1300912E-6	45.000004	1
ACTTATA	30	2.1300912E-6	45.000004	7
GTCTTAC	30	2.1300912E-6	45.000004	31
CTTACAC	30	2.1300912E-6	45.000004	33
CGAGATA	30	2.1300912E-6	45.000004	19
CAAGCGA	30	2.1300912E-6	45.000004	15
ACCGGCG	20	6.9782155E-4	45.0	20
CACACCG	20	6.9782155E-4	45.0	17
ATCTATC	25	3.8452323E-5	45.0	3
TACGGCT	85	0.0	45.0	7
ATGAAAC	35	1.1855809E-7	45.0	3
TACACGC	25	3.8452323E-5	45.0	35
CGGCGCA	20	6.9782155E-4	45.0	22
GCTGTCA	20	6.9782155E-4	45.0	1
ATACGGC	95	0.0	45.0	6
TGGGCGA	20	6.9782155E-4	45.0	6
TTGCGGG	20	6.9782155E-4	45.0	3