SRR2936547.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936547.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	99956
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCG	250	0.25011004842130535	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	218	0.2180959622233783	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGC	201	0.20108847893072954	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTC	191	0.1910840769938773	No Hit
GCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGC	150	0.15006602905278324	TruSeq Adapter, Index 13 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATGG	20	7.0023816E-4	45.000004	2
AGCGCGG	20	7.0023816E-4	45.000004	2
TGGGCAC	20	7.0023816E-4	45.000004	6
CGTTTTA	20	7.0023816E-4	45.000004	1
CTAGGCA	20	7.0023816E-4	45.000004	5
TATGGGC	45	3.765308E-10	45.0	4
GTAGGGC	25	3.865212E-5	45.0	4
TTAACGG	25	3.865212E-5	45.0	2
GGGTTTA	25	3.865212E-5	45.0	8
CGTTTTT	115	0.0	41.086956	1
GCGGGAG	50	1.0604708E-9	40.5	5
TAACGGG	45	1.8981154E-8	40.0	3
GGCACAC	40	3.4161712E-7	39.375004	8
GGCGATT	40	3.4161712E-7	39.375004	8
CGCGGGA	35	6.191236E-6	38.571426	4
GGATAAC	35	6.191236E-6	38.571426	8
AGCGGGA	35	6.191236E-6	38.571426	4
CTGGGCA	35	6.191236E-6	38.571426	5
TGGGAAC	35	6.191236E-6	38.571426	6
AAAGGAG	35	6.191236E-6	38.571426	5