##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936547.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 99956 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.938032734403137 33.0 31.0 34.0 30.0 34.0 2 32.054463964144226 33.0 31.0 34.0 30.0 34.0 3 31.95063828084357 33.0 31.0 34.0 30.0 34.0 4 35.70046820601065 37.0 35.0 37.0 35.0 37.0 5 35.78981751970867 37.0 35.0 37.0 35.0 37.0 6 35.756022649965985 37.0 35.0 37.0 35.0 37.0 7 26.86151906839009 35.0 11.0 37.0 0.0 37.0 8 31.188803073352275 35.0 19.0 37.0 17.0 37.0 9 35.96103285445596 39.0 32.0 39.0 32.0 39.0 10 36.53718636199928 37.0 35.0 39.0 32.0 39.0 11 36.90741926447637 39.0 37.0 39.0 33.0 39.0 12 36.940803953739646 39.0 35.0 39.0 33.0 39.0 13 36.85440593861299 39.0 35.0 39.0 33.0 39.0 14 38.03442514706471 40.0 37.0 41.0 33.0 41.0 15 38.130587458481735 40.0 37.0 41.0 33.0 41.0 16 38.11298971547481 40.0 37.0 41.0 33.0 41.0 17 38.036245948217214 40.0 36.0 41.0 33.0 41.0 18 37.93914322301813 40.0 36.0 41.0 33.0 41.0 19 37.79110808755853 40.0 36.0 41.0 33.0 41.0 20 37.86404017767818 40.0 36.0 41.0 33.0 41.0 21 37.81856016647325 40.0 36.0 41.0 33.0 41.0 22 37.81499859938373 40.0 36.0 41.0 33.0 41.0 23 37.77276001440634 39.0 36.0 41.0 33.0 41.0 24 37.749319700668295 39.0 36.0 41.0 33.0 41.0 25 37.65624874944976 39.0 36.0 41.0 33.0 41.0 26 37.524420745127856 39.0 35.0 41.0 33.0 41.0 27 37.44662651566689 39.0 35.0 41.0 33.0 41.0 28 37.45774140621874 39.0 36.0 41.0 33.0 41.0 29 37.465044619632636 39.0 36.0 41.0 33.0 41.0 30 37.41404217855857 39.0 36.0 41.0 33.0 41.0 31 37.29157829444956 39.0 35.0 41.0 32.0 41.0 32 37.14939573412301 39.0 35.0 41.0 32.0 41.0 33 37.095492016487256 39.0 35.0 41.0 32.0 41.0 34 36.99007563327864 39.0 35.0 41.0 31.0 41.0 35 36.90073632398255 39.0 35.0 41.0 31.0 41.0 36 36.75282124134619 39.0 35.0 41.0 31.0 41.0 37 36.67620753131378 39.0 35.0 41.0 31.0 41.0 38 36.512725599263675 39.0 35.0 41.0 30.0 41.0 39 36.52955300332146 39.0 35.0 41.0 30.0 41.0 40 36.330585457601345 39.0 35.0 40.0 30.0 41.0 41 36.2691384209052 39.0 35.0 40.0 30.0 41.0 42 36.19327504101805 39.0 35.0 40.0 30.0 41.0 43 36.14348313257833 39.0 35.0 40.0 30.0 41.0 44 35.91428228420505 38.0 35.0 40.0 29.0 41.0 45 35.792918884309096 38.0 35.0 40.0 28.0 41.0 46 35.62733602785225 38.0 35.0 40.0 27.0 41.0 47 35.53531553883709 38.0 35.0 40.0 27.0 41.0 48 35.45112849653848 38.0 34.0 40.0 27.0 41.0 49 35.28408499739886 38.0 34.0 40.0 26.0 41.0 50 35.049671855616474 38.0 34.0 40.0 26.0 41.0 51 32.83905918604186 36.0 31.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 3.0 10 4.0 11 4.0 12 3.0 13 1.0 14 3.0 15 2.0 16 5.0 17 19.0 18 26.0 19 61.0 20 83.0 21 132.0 22 225.0 23 359.0 24 492.0 25 750.0 26 948.0 27 1197.0 28 1360.0 29 1668.0 30 2027.0 31 2506.0 32 3380.0 33 4587.0 34 7236.0 35 9548.0 36 9017.0 37 14512.0 38 18715.0 39 21077.0 40 4.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.07819440553843 19.60262515506823 25.006002641162112 16.31317779823122 2 27.753211413021727 27.18496138300852 28.13137780623474 16.930449397735003 3 30.43439113209812 25.178078354475968 28.238424906959064 16.149105606466847 4 27.541118091960463 25.91040057625355 28.823682420264916 17.72479891152107 5 25.083036536075877 30.806554884149023 25.94341510264516 18.166993477129935 6 25.309136019848733 36.122894073392295 24.658849893953338 13.909120012805634 7 61.78318460122454 27.799231661931252 6.46084277081916 3.956740966025051 8 84.84133018528152 4.8401296570491015 6.581896034255072 3.7366441234143024 9 79.02577133938932 6.933050542238585 8.702829244867742 5.3383488735043425 10 42.6007443275041 26.71475449197647 17.38564968586178 13.298851494657649 11 31.755972627956304 25.835367561727157 24.481771979671056 17.926887830645484 12 27.69218456120693 23.900516227139942 28.987754612029292 19.419544599623833 13 22.817039497378847 29.014766497258794 31.049661851214534 17.118532154147825 14 19.862739605426388 31.50886390011605 28.690623874504784 19.937772619952778 15 18.854295890191686 26.98087158349674 36.66213133778863 17.502701188522952 16 21.498459322101724 25.049021569490577 33.66981471847613 19.782704389931567 17 21.469446556484854 24.424746888630995 29.606026651726758 24.49977990315739 18 23.25423186201929 26.21353395494017 30.971627516107088 19.56060666693345 19 24.240665892992915 28.246428428508548 27.580135259514186 19.93277041898435 20 24.975989435351558 27.008883908919923 28.879707071111287 19.13541958461723 21 22.642962903677617 27.96030253311457 28.544559606226738 20.85217495698107 22 20.849173636400014 25.697306814998598 29.47196766577294 23.981551882828445 23 20.46500460202489 28.63660010404578 28.576573692424667 22.321821601504663 24 21.05126255552443 25.022009684261075 32.124134619232464 21.802593140982033 25 19.072391852415063 28.769658649805912 30.39937572531914 21.758573772459883 26 18.916323182200166 30.599463764056186 29.152827243987357 21.33138580975629 27 20.310936812197365 29.67905878586578 29.058785865780944 20.951218536155906 28 17.97190763936132 27.965304734082995 32.776421625515226 21.286366001040456 29 19.580615470807157 27.327023890511825 30.965624874944975 22.126735763736043 30 20.7351234543199 27.716195125855375 29.139821521469443 22.408859898355278 31 22.536916243146983 27.416063067749807 27.713193805274322 22.333826883828884 32 23.068149985993838 27.79422946096282 27.714194245468004 21.423426307575333 33 21.895634078994757 27.049901956861017 28.038336868222018 23.016127095922208 34 19.41154107807435 26.887830645484012 30.175277121933654 23.525351154507984 35 19.499579815118654 26.91284165032614 29.59102004882148 23.996558485733726 36 22.33882908479731 27.013886109888354 29.790107647364838 20.857177157949497 37 19.538596982672377 27.928288446916643 30.357357237184363 22.17575733322662 38 20.328944735683702 28.71563487934691 27.82424266677338 23.131177718196007 39 20.816159110008403 27.469086398015126 28.298451318580177 23.416303173396294 40 21.314378326463643 25.633278642602747 29.419944775701307 23.6323982552323 41 18.385089439353315 26.256552883268636 29.82512305414382 25.533234623234225 42 21.019248469326506 25.313137780623475 29.86814198247229 23.799471767577735 43 21.155308335667694 25.76033454720077 29.515987034295087 23.56837008283645 44 19.66365200688303 27.67317619752691 29.27888270839169 23.38428908719837 45 19.965784945375965 28.271439433350675 27.107927488094763 24.654848133178596 46 21.87362439473368 27.918284044979792 28.296450438192807 21.911641122093723 47 19.46456440833967 26.594701668734245 30.051222537916683 23.889511385009403 48 20.39797510904798 24.639841530273323 30.4493977350034 24.5127856256753 49 20.18087958701829 23.67841850414182 32.01108487734603 24.129617031493858 50 19.266477249989997 25.373164192244584 30.604465965024612 24.755892592740807 51 19.32450278122374 25.708311657129133 28.48353275441194 26.483652807235185 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 49.0 1 113.0 2 177.0 3 339.0 4 501.0 5 381.0 6 261.0 7 226.5 8 192.0 9 195.0 10 198.0 11 189.0 12 180.0 13 185.0 14 190.0 15 192.0 16 194.0 17 220.5 18 247.0 19 263.0 20 279.0 21 295.0 22 311.0 23 385.0 24 459.0 25 585.5 26 830.0 27 948.0 28 1224.0 29 1500.0 30 1768.5 31 2037.0 32 2371.0 33 2705.0 34 2923.5 35 3142.0 36 3470.0 37 3798.0 38 4234.0 39 4670.0 40 5457.5 41 6245.0 42 6897.5 43 7550.0 44 8021.5 45 8493.0 46 9487.0 47 10481.0 48 10109.5 49 9738.0 50 9327.0 51 8916.0 52 7746.5 53 6577.0 54 5835.5 55 5094.0 56 4524.5 57 3955.0 58 3486.0 59 3017.0 60 2715.0 61 2413.0 62 2123.0 63 1833.0 64 1534.5 65 1236.0 66 979.5 67 723.0 68 560.5 69 398.0 70 296.5 71 195.0 72 148.5 73 102.0 74 94.0 75 74.5 76 63.0 77 50.0 78 37.0 79 34.0 80 31.0 81 21.5 82 12.0 83 9.5 84 7.0 85 4.0 86 1.0 87 1.5 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 99956.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.922285805754534 #Duplication Level Percentage of deduplicated Percentage of total 1 72.20174294410103 38.21081275761335 2 10.675060020038186 11.298971547480892 3 5.41976218832114 8.60478610588659 4 3.338437399572771 7.067109528192404 5 2.3837879733076237 6.307775421185322 6 1.6200684322955066 5.144263475929408 7 1.2533318210174105 4.643042938893113 8 0.7958562543715383 3.3694825723318256 9 0.6767613754513317 3.2234183040537836 >10 1.6200684322955066 10.921805594461564 >50 0.00567118471048602 0.19808715834967386 >100 0.0094519745174767 1.0104445956220736 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCG 250 0.25011004842130535 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 218 0.2180959622233783 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGC 201 0.20108847893072954 No Hit GAATCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTC 191 0.1910840769938773 No Hit GCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGC 150 0.15006602905278324 TruSeq Adapter, Index 13 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11304974188643004 0.0 2 0.0 0.0 0.0 0.6422826043459122 0.0 3 0.0 0.0 0.0 0.8143583176597703 0.0 4 0.0 0.0 0.0 1.0964824522790027 0.0 5 0.0 0.0 0.0 1.9618632198167194 0.0 6 0.0 0.0 0.0 2.394053383488735 0.0 7 0.0 0.0 0.0 2.8782664372323823 0.0 8 0.0 0.0 0.0 3.890711913241826 0.0 9 0.0 0.0 0.0 4.282884469166433 0.0 10 0.0 0.0 0.0 5.519428548561367 0.0 11 0.0 0.0 0.0 6.515866981471848 0.0 12 0.0 0.0 0.0 7.641362199367721 0.0 13 0.0 0.0 0.0 7.992516707351235 0.0 14 0.0 0.0 0.0 8.141582296210332 0.0 15 0.0 0.0 0.0 8.433710832766417 0.0 16 0.0 0.0 0.0 9.010964824522791 0.0 17 0.0 0.0 0.0 9.700268117971907 0.0 18 0.0 0.0 0.0 10.549641842410661 0.0 19 0.0 0.0 0.0 11.036856216735364 0.0 20 0.0 0.0 0.0 11.482052102925287 0.0 21 0.0 0.0 0.0 12.053303453519549 0.0 22 0.0 0.0 0.0 12.66857417263596 0.0 23 0.0 0.0 0.0 13.328864700468205 0.0 24 0.0 0.0 0.0 13.82208171595502 0.0 25 0.0 0.0 0.0 14.220256913041739 0.0 26 0.0 0.0 0.0 14.61342990916003 0.0 27 0.0 0.0 0.0 14.96958661811197 0.0 28 0.0 0.0 0.0 15.4007763415903 0.0 29 0.0 0.0 0.0 15.811957261194927 0.0 30 0.0 0.0 0.0 16.301172515907 0.0 31 0.0 0.0 0.0 16.800392172555924 0.0 32 0.0 0.0 0.0 17.21557485293529 0.0 33 0.0 0.0 0.0 17.641762375445197 0.0 34 0.0 0.0 0.0 18.083956941054065 0.0 35 0.0 0.0 0.0 18.58717835847773 0.0 36 0.0 0.0 0.0 19.000360158469725 0.0 37 0.0 0.0 0.0 19.415542838849095 0.0 38 0.0 0.0 0.0 19.88074752891272 0.0 39 0.0 0.0 0.0 20.344951778782665 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATGG 20 7.0023816E-4 45.000004 2 AGCGCGG 20 7.0023816E-4 45.000004 2 TGGGCAC 20 7.0023816E-4 45.000004 6 CGTTTTA 20 7.0023816E-4 45.000004 1 CTAGGCA 20 7.0023816E-4 45.000004 5 TATGGGC 45 3.765308E-10 45.0 4 GTAGGGC 25 3.865212E-5 45.0 4 TTAACGG 25 3.865212E-5 45.0 2 GGGTTTA 25 3.865212E-5 45.0 8 CGTTTTT 115 0.0 41.086956 1 GCGGGAG 50 1.0604708E-9 40.5 5 TAACGGG 45 1.8981154E-8 40.0 3 GGCACAC 40 3.4161712E-7 39.375004 8 GGCGATT 40 3.4161712E-7 39.375004 8 CGCGGGA 35 6.191236E-6 38.571426 4 GGATAAC 35 6.191236E-6 38.571426 8 AGCGGGA 35 6.191236E-6 38.571426 4 CTGGGCA 35 6.191236E-6 38.571426 5 TGGGAAC 35 6.191236E-6 38.571426 6 AAAGGAG 35 6.191236E-6 38.571426 5 >>END_MODULE