SRR2936546.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936546.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	55509
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCG	356	0.6413374407753697	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGC	245	0.4413698679493415	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	241	0.4341638292889441	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTC	230	0.41434722297285126	No Hit
GCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	135	0.2432038047884127	No Hit
CCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	101	0.18195247617503468	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCT	100	0.1801509665099353	No Hit
CTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGCT	85	0.15312832153344502	Illumina Single End Adapter 1 (95% over 21bp)
GAATGAAACCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCG	81	0.14592228287304762	No Hit
GAATCTATCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTC	81	0.14592228287304762	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	66	0.11889963789655732	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGC	63	0.11349510890125926	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGGGAT	20	6.975348E-4	45.000004	5
TTCGTGT	20	6.975348E-4	45.000004	25
GCGATGA	20	6.975348E-4	45.000004	9
AACTGGG	20	6.975348E-4	45.000004	3
TGCCGGC	20	6.975348E-4	45.000004	24
AGGATCA	20	6.975348E-4	45.000004	7
TATGCGG	20	6.975348E-4	45.000004	2
GTCCGGG	20	6.975348E-4	45.000004	3
GCGGCTA	20	6.975348E-4	45.000004	24
TGTCACT	20	6.975348E-4	45.000004	3
CGTAGCC	20	6.975348E-4	45.000004	16
GAGTTCT	20	6.975348E-4	45.000004	9
CCGTAGC	20	6.975348E-4	45.000004	15
CGGCGCA	20	6.975348E-4	45.000004	22
TGCTTGG	20	6.975348E-4	45.000004	2
TTCTTCT	20	6.975348E-4	45.000004	36
CTGGAAC	20	6.975348E-4	45.000004	35
TGGATAG	20	6.975348E-4	45.000004	1
CTTCGTG	20	6.975348E-4	45.000004	24
TCACTTA	20	6.975348E-4	45.000004	5