SRR2936544.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936544.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	114152
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCG	368	0.3223771813021235	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGC	338	0.2960964328264069	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTC	273	0.23915481112902096	TruSeq Adapter, Index 13 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	209	0.18308921438082557	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTAATA	20	7.006586E-4	45.000004	8
CGCGGGT	20	7.006586E-4	45.000004	4
GCACGGG	20	7.006586E-4	45.000004	3
AATGCGG	20	7.006586E-4	45.000004	2
ATCCCCC	20	7.006586E-4	45.000004	42
GGTATCA	20	7.006586E-4	45.000004	8
GCGATGT	20	7.006586E-4	45.000004	9
CCCATCC	20	7.006586E-4	45.000004	39
AATCTAT	55	6.002665E-11	40.909092	2
GGCGATT	45	1.9022991E-8	40.0	8
GGGATAT	45	1.9022991E-8	40.0	7
ATATGGG	40	3.4218647E-7	39.375004	3
AGGCGAT	40	3.4218647E-7	39.375004	7
CGTTTTA	40	3.4218647E-7	39.375004	1
ATCTCTT	70	0.0	38.571426	7
TATGGGC	35	6.1989867E-6	38.571426	4
TATCTCT	70	0.0	38.571426	6
TAGGGCA	35	6.1989867E-6	38.571426	5
ACGTAGG	35	6.1989867E-6	38.571426	2
ACCGGGG	30	1.1334929E-4	37.500004	4