##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936544.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 114152 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.945134557432194 33.0 31.0 34.0 30.0 34.0 2 32.06246933912678 33.0 31.0 34.0 30.0 34.0 3 31.985256500105123 33.0 31.0 34.0 30.0 34.0 4 35.73531782185157 37.0 35.0 37.0 35.0 37.0 5 35.79311794799916 37.0 35.0 37.0 35.0 37.0 6 35.763955077440606 37.0 35.0 37.0 35.0 37.0 7 26.758155792276963 35.0 10.0 37.0 0.0 37.0 8 31.103922839722475 35.0 19.0 37.0 17.0 37.0 9 35.90258602565001 39.0 32.0 39.0 32.0 39.0 10 36.650448524773985 38.0 35.0 39.0 33.0 39.0 11 36.934236807064266 39.0 37.0 39.0 33.0 39.0 12 36.852363515312916 39.0 35.0 39.0 33.0 39.0 13 36.65994463522321 39.0 35.0 39.0 33.0 39.0 14 37.74007463732567 40.0 36.0 41.0 33.0 41.0 15 37.879791856472075 40.0 36.0 41.0 33.0 41.0 16 37.88957705515453 40.0 36.0 41.0 33.0 41.0 17 37.78691569135889 40.0 36.0 41.0 33.0 41.0 18 37.67271707898241 39.0 36.0 41.0 33.0 41.0 19 37.55972738103581 39.0 36.0 41.0 33.0 41.0 20 37.645201135328335 39.0 36.0 41.0 33.0 41.0 21 37.55305207092298 39.0 35.0 41.0 33.0 41.0 22 37.57615284883313 39.0 35.0 41.0 33.0 41.0 23 37.5532447964118 39.0 35.0 41.0 33.0 41.0 24 37.47938713294555 39.0 35.0 41.0 33.0 41.0 25 37.40651937767188 39.0 35.0 41.0 33.0 41.0 26 37.261248160347606 39.0 35.0 41.0 32.0 41.0 27 37.12440430303455 39.0 35.0 41.0 32.0 41.0 28 37.104194407456724 39.0 35.0 41.0 32.0 41.0 29 37.08026140584484 39.0 35.0 41.0 32.0 41.0 30 36.98080629336324 39.0 35.0 41.0 32.0 41.0 31 36.846327703412996 39.0 35.0 41.0 31.0 41.0 32 36.67983040156984 39.0 35.0 41.0 31.0 41.0 33 36.566087322166936 39.0 35.0 40.0 31.0 41.0 34 36.4109345434158 39.0 35.0 40.0 30.0 41.0 35 36.27800651762562 38.0 35.0 40.0 30.0 41.0 36 36.1034673067489 38.0 35.0 40.0 30.0 41.0 37 35.92216518326442 38.0 35.0 40.0 29.0 41.0 38 35.76448069241012 38.0 35.0 40.0 29.0 41.0 39 35.601443689116266 38.0 35.0 40.0 28.0 41.0 40 35.32567979536057 38.0 34.0 40.0 26.0 41.0 41 35.18700504590371 38.0 34.0 40.0 25.0 41.0 42 35.067690447823956 38.0 34.0 40.0 25.0 41.0 43 34.980744971616794 38.0 34.0 40.0 25.0 41.0 44 34.71144614198612 37.0 34.0 40.0 24.0 41.0 45 34.55212348447684 37.0 33.0 40.0 24.0 41.0 46 34.300914570046956 37.0 33.0 40.0 23.0 41.0 47 34.095355315719395 37.0 33.0 40.0 22.0 41.0 48 33.96480131754152 36.0 33.0 40.0 22.0 41.0 49 33.78806328404233 36.0 33.0 40.0 21.0 41.0 50 33.58626217674679 36.0 33.0 40.0 20.0 41.0 51 31.26673207652954 35.0 28.0 38.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 9.0 10 10.0 11 3.0 12 6.0 13 3.0 14 4.0 15 9.0 16 12.0 17 39.0 18 46.0 19 90.0 20 154.0 21 268.0 22 329.0 23 531.0 24 775.0 25 1013.0 26 1461.0 27 1699.0 28 2011.0 29 2400.0 30 2800.0 31 3436.0 32 4377.0 33 6156.0 34 9600.0 35 11617.0 36 10730.0 37 16177.0 38 19372.0 39 19006.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.3216413203448 18.781098885696267 23.673698226925502 15.223561567033428 2 29.046359240311165 26.042469689536755 27.37490363725559 17.536267432896487 3 31.12078631999439 25.685051510267016 26.250087602494922 16.944074567243675 4 28.480447123134066 24.722300091106593 28.306118158245148 18.491134627514192 5 26.001296516924803 28.728362183754992 25.612341439484197 19.65799985983601 6 26.6416707547831 34.85790875324129 24.392038685261756 14.108381806713854 7 61.051930758988014 27.83481673558063 7.142231410750578 3.9710210946807765 8 82.46986474174784 5.209720372836219 7.82553087111921 4.494884014296727 9 77.66924802018362 6.170719742098255 8.955603055575024 7.204429182143107 10 49.56811970004906 19.162169738594155 15.998843647067067 15.27086691428972 11 35.17940990959422 22.998282991099586 21.937416777629824 19.88489032167636 12 31.35643703132665 20.465694862989697 27.944319854229448 20.2335482514542 13 24.774861588058027 24.533954727030626 31.08486929707758 19.606314387833766 14 19.51520779311795 27.824304436190346 31.27233863620436 21.38814913448735 15 18.606769920807345 22.774896629055995 38.23936505711683 20.378968393019832 16 22.01976312285374 22.436750998668444 33.06205760740066 22.48142827107716 17 23.578211507463735 22.14591071553718 27.79276753801948 26.483110238979606 18 24.494533604317052 23.97242273459948 30.10196930408578 21.431074356997687 19 25.896173523021936 24.814282710771604 26.286004625411728 23.00353914079473 20 26.847536617842877 25.12439554278506 26.736281449295674 21.29178639007639 21 24.975471301422665 25.621977713925293 28.78530380545238 20.617247179199662 22 24.5549793258112 22.689046184035323 27.868981708599062 24.88699278155442 23 24.232602144509073 24.443724157264 27.959212278365687 23.364461419861236 24 24.38327843576985 22.579543065386503 28.863270025930337 24.173908472913308 25 22.38594155161539 24.879108557011705 28.586446141986123 24.148503749386784 26 21.048251454201417 25.911941972107368 27.386291961595067 25.653514612096153 27 21.756955638096574 26.178253556661296 29.055995514752258 23.00879529048987 28 20.147697806433527 24.44109608241643 30.76950031536898 24.641705795781064 29 21.187539421122715 23.836638867474946 29.6455603055575 25.33026140584484 30 22.06444039526246 24.694267292732498 29.797112621767468 23.44417969023758 31 25.692059709860537 24.204569346134978 25.660522811689678 24.442848132314808 32 26.653935104071763 25.685051510267016 25.222510337094402 22.438503048566822 33 25.09198261966501 24.829175134907842 25.673663185927538 24.405179059499616 34 23.600988156142687 24.49278155441867 27.127864601583852 24.77836568785479 35 22.20986053682809 25.430128250052565 29.08140023827879 23.278610974840564 36 25.71045623379354 24.712663816665497 26.185261756254818 23.391618193286146 37 23.326792347046045 26.168617282220197 27.77174293923891 22.73284743149485 38 22.393825776158106 28.13704534305137 24.494533604317052 24.974595276473472 39 24.023232181652535 26.625902305697668 26.51815123694723 22.832714275702575 40 25.181337164482443 24.583012124185295 27.119980377041138 23.11567033429112 41 21.280398065736915 23.315404022706566 27.546604527296935 27.857593384259584 42 22.3018431564931 22.98163851706497 28.88429462471091 25.832223701731028 43 23.726259723876936 22.897540121942672 27.294309341930056 26.08189081225033 44 22.167811339266944 24.817786810568364 27.503679304786598 25.510722545378094 45 21.57649449856332 25.994288317331275 26.637290630037143 25.79192655406826 46 24.48051720513 25.280327983740975 26.131824234354195 24.107330576774828 47 21.699137991449994 24.22384189501717 29.486999789754016 24.590020323778823 48 22.95448174364006 23.16560375639498 28.889550774406054 24.990363725558904 49 22.627724437591983 22.73284743149485 29.666584904338077 24.972843226575094 50 22.053928095872173 24.136239400098113 28.653900063073795 25.15593244095592 51 21.332959562688345 25.419615950662276 25.98815614268694 27.259268343962432 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 31.0 1 129.0 2 227.0 3 335.5 4 444.0 5 326.5 6 209.0 7 217.5 8 226.0 9 198.5 10 171.0 11 196.5 12 222.0 13 213.5 14 205.0 15 203.5 16 202.0 17 201.0 18 200.0 19 212.5 20 225.0 21 262.0 22 299.0 23 318.0 24 337.0 25 431.5 26 608.5 27 691.0 28 889.0 29 1087.0 30 1297.0 31 1507.0 32 1718.0 33 1929.0 34 2181.0 35 2433.0 36 2735.5 37 3038.0 38 3374.0 39 3710.0 40 4471.0 41 5232.0 42 5995.5 43 6759.0 44 7574.5 45 8390.0 46 9380.5 47 10371.0 48 10128.5 49 9886.0 50 9598.5 51 9311.0 52 8453.0 53 7595.0 54 7011.5 55 6428.0 56 6331.5 57 6235.0 58 5911.0 59 5587.0 60 5316.0 61 5045.0 62 4642.5 63 4240.0 64 3800.0 65 3360.0 66 3033.5 67 2707.0 68 2291.0 69 1875.0 70 1589.0 71 1303.0 72 1018.0 73 733.0 74 635.0 75 433.5 76 330.0 77 234.0 78 138.0 79 115.0 80 92.0 81 70.0 82 48.0 83 33.0 84 18.0 85 10.5 86 3.0 87 3.5 88 4.0 89 3.5 90 3.0 91 2.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 114152.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.253626743289644 #Duplication Level Percentage of deduplicated Percentage of total 1 70.49124928856004 34.71949681126919 2 9.929923164484917 9.781694582661714 3 5.595475241889584 8.26792347046044 4 3.731502561183836 7.351601373607121 5 2.6981360273192943 6.644649239610343 6 1.9173306772908367 5.666129371364496 7 1.543824701195219 5.3227275912818 8 1.2058907228229938 4.751559324409559 9 0.8750711439954468 3.8790384750157685 >10 1.9902532726237907 12.065491625201485 >50 0.01245019920318725 0.41523582591632213 >100 0.008892999430848036 1.1344523092017662 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCG 368 0.3223771813021235 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGC 338 0.2960964328264069 No Hit GAATCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTC 273 0.23915481112902096 TruSeq Adapter, Index 13 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 209 0.18308921438082557 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1173873431915341 0.0 2 0.0 0.0 0.0 0.6491344873501997 0.0 3 0.0 0.0 0.0 0.8173312775947859 0.0 4 0.0 0.0 0.0 1.1528488331347677 0.0 5 0.0 0.0 0.0 2.3039456163711542 0.0 6 0.0 0.0 0.0 2.739330016118859 0.0 7 0.0 0.0 0.0 3.262316910785619 0.0 8 0.0 0.0 0.0 4.217184105403322 0.0 9 0.0 0.0 0.0 4.536933211857874 0.0 10 0.0 0.0 0.0 5.884259583712944 0.0 11 0.0 0.0 0.0 6.903076599621557 0.0 12 0.0 0.0 0.0 8.200469549372766 0.0 13 0.0 0.0 0.0 8.55438362884575 0.0 14 0.0 0.0 0.0 8.690167495970286 0.0 15 0.0 0.0 0.0 8.973123554558834 0.0 16 0.0 0.0 0.0 9.5048706987175 0.0 17 0.0 0.0 0.0 10.030485668231831 0.0 18 0.0 0.0 0.0 10.707652953956128 0.0 19 0.0 0.0 0.0 11.108872380685401 0.0 20 0.0 0.0 0.0 11.528488331347678 0.0 21 0.0 0.0 0.0 12.034830751979817 0.0 22 0.0 0.0 0.0 12.54818137220548 0.0 23 0.0 0.0 0.0 12.995830121241854 0.0 24 0.0 0.0 0.0 13.36989277454622 0.0 25 0.0 0.0 0.0 13.716798654425679 0.0 26 0.0 0.0 0.0 14.082977083187329 0.0 27 0.0 0.0 0.0 14.426378863270026 0.0 28 0.0 0.0 0.0 14.738243745181864 0.0 29 0.0 0.0 0.0 15.09828999929918 0.0 30 0.0 0.0 0.0 15.526666199453361 0.0 31 0.0 0.0 0.0 15.893720653164202 0.0 32 0.0 0.0 0.0 16.260775106875045 0.0 33 0.0 0.0 0.0 16.59979676221179 0.0 34 0.0 0.0 0.0 16.963347116125867 0.0 35 0.0 0.0 0.0 17.375078842245426 0.0 36 0.0 0.0 0.0 17.745637395753032 0.0 37 0.0 0.0 0.0 18.117071974209825 0.0 38 0.0 0.0 0.0 18.522671525685052 0.0 39 0.0 0.0 0.0 19.077195318522673 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTAATA 20 7.006586E-4 45.000004 8 CGCGGGT 20 7.006586E-4 45.000004 4 GCACGGG 20 7.006586E-4 45.000004 3 AATGCGG 20 7.006586E-4 45.000004 2 ATCCCCC 20 7.006586E-4 45.000004 42 GGTATCA 20 7.006586E-4 45.000004 8 GCGATGT 20 7.006586E-4 45.000004 9 CCCATCC 20 7.006586E-4 45.000004 39 AATCTAT 55 6.002665E-11 40.909092 2 GGCGATT 45 1.9022991E-8 40.0 8 GGGATAT 45 1.9022991E-8 40.0 7 ATATGGG 40 3.4218647E-7 39.375004 3 AGGCGAT 40 3.4218647E-7 39.375004 7 CGTTTTA 40 3.4218647E-7 39.375004 1 ATCTCTT 70 0.0 38.571426 7 TATGGGC 35 6.1989867E-6 38.571426 4 TATCTCT 70 0.0 38.571426 6 TAGGGCA 35 6.1989867E-6 38.571426 5 ACGTAGG 35 6.1989867E-6 38.571426 2 ACCGGGG 30 1.1334929E-4 37.500004 4 >>END_MODULE