SRR2936543.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936543.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	269387
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3885	1.4421631333360556	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	682	0.2531673763024942	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTC	620	0.23015216027499472	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCG	444	0.16481864380983494	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGC	440	0.16333379116289945	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	350	0.12992460660685184	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGGATC	40	6.7811925E-9	45.0	6
CGAAGGA	50	2.1827873E-11	45.0	4
CGTTTTT	1750	0.0	43.585716	1
CGTTTTA	300	0.0	42.000004	1
CCGGGAT	55	6.002665E-11	40.90909	5
AGGCACC	50	1.0750227E-9	40.5	7
CGGTTTT	125	0.0	39.600002	1
CACGGGC	40	3.4450932E-7	39.375	4
AATACGG	35	6.2304916E-6	38.57143	2
CGGGCTC	65	9.094947E-12	38.07692	6
CACGGGT	30	1.1376027E-4	37.500004	4
TAACGTC	30	1.1376027E-4	37.500004	32
TACCTGG	30	1.1376027E-4	37.500004	10
TGGGCGA	90	0.0	37.500004	6
CGTTTCA	30	1.1376027E-4	37.500004	1
TACACGG	30	1.1376027E-4	37.500004	2
CTCGTAA	55	2.732122E-9	36.81818	33
CGTAACC	55	2.732122E-9	36.81818	35
TAGCTCG	55	2.732122E-9	36.81818	30
GTAAGGC	80	0.0	36.5625	4