SRR2936542.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936542.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	288526
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC	3192	1.1063127759716629	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCG	2161	0.7489792947602643	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGC	1561	0.5410257654422825	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1297	0.4495262125423705	No Hit
GAACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCT	698	0.24191927243991876	No Hit
GAATCTATCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC	628	0.2176580273528209	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTT	569	0.1972092636365527	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCT	560	0.19408996069678297	No Hit
GCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	544	0.18854453324830345	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCG	501	0.17364119698051475	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTC	425	0.14730041660023707	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTT	416	0.14418111366046735	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGC	386	0.13378343719456826	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATAGCG	20	7.024496E-4	45.0	1
AATCTAT	140	0.0	41.785713	2
CTATCTC	175	0.0	41.14286	5
CGCACGG	50	1.0750227E-9	40.5	2
CGTTTTT	535	0.0	40.373833	1
CGAAGGA	45	1.9197614E-8	40.000004	4
TATCTCT	185	0.0	38.918922	6
TACGGCT	250	0.0	38.699997	7
GGACCGA	105	0.0	38.57143	8
TAGACGG	35	6.232034E-6	38.571426	2
GCTACGA	35	6.232034E-6	38.571426	10
ATGCAGT	35	6.232034E-6	38.571426	3
ATCTATC	160	0.0	37.96875	3
GAATCTG	490	0.0	37.65306	1
TACGGGA	60	1.546141E-10	37.499996	4
CATAGGT	30	1.1378038E-4	37.499996	4
CGGATCA	30	1.1378038E-4	37.499996	39
TACCGGG	55	2.733941E-9	36.81818	3
ATAAGGT	25	0.002104499	36.0	4
GCGATGT	25	0.002104499	36.0	9