##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936541.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 272752 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.995413415850297 33.0 31.0 34.0 30.0 34.0 2 32.115991816741946 33.0 31.0 34.0 30.0 34.0 3 31.698488003754328 33.0 31.0 34.0 30.0 34.0 4 35.59761248313486 37.0 35.0 37.0 33.0 37.0 5 35.78622704874758 37.0 35.0 37.0 35.0 37.0 6 35.79331773919165 37.0 35.0 37.0 35.0 37.0 7 26.868484924033556 35.0 10.0 37.0 0.0 37.0 8 31.205069073737313 36.0 19.0 37.0 17.0 37.0 9 36.03771924678829 39.0 32.0 39.0 32.0 39.0 10 36.77420880506834 38.0 35.0 39.0 33.0 39.0 11 37.10531911773332 39.0 37.0 39.0 34.0 39.0 12 37.13991464773861 39.0 37.0 39.0 34.0 39.0 13 37.11927685223206 39.0 37.0 39.0 34.0 39.0 14 38.294916260925675 40.0 38.0 41.0 34.0 41.0 15 38.390831231301696 40.0 38.0 41.0 34.0 41.0 16 38.345379685575175 40.0 38.0 41.0 34.0 41.0 17 38.27031515809233 40.0 37.0 41.0 34.0 41.0 18 38.098767378424355 40.0 37.0 41.0 33.0 41.0 19 37.916158268317005 40.0 37.0 41.0 33.0 41.0 20 37.86536853991905 40.0 36.0 41.0 33.0 41.0 21 37.79120593066229 40.0 36.0 41.0 33.0 41.0 22 37.792287499266735 40.0 36.0 41.0 33.0 41.0 23 37.720548336950785 39.0 35.0 41.0 33.0 41.0 24 37.635089751862495 39.0 35.0 41.0 33.0 41.0 25 37.5017085117616 39.0 35.0 41.0 33.0 41.0 26 37.3809027981463 39.0 35.0 41.0 33.0 41.0 27 37.252397782601044 39.0 35.0 41.0 33.0 41.0 28 37.19932392796387 39.0 35.0 41.0 33.0 41.0 29 37.15293746700299 39.0 35.0 41.0 32.0 41.0 30 37.04411333372441 39.0 35.0 41.0 32.0 41.0 31 36.87388176805303 39.0 35.0 41.0 31.0 41.0 32 36.64536282043761 39.0 35.0 41.0 31.0 41.0 33 36.43319572358773 39.0 35.0 41.0 30.0 41.0 34 36.12754443597114 39.0 35.0 41.0 29.0 41.0 35 35.90570188302927 39.0 35.0 41.0 28.0 41.0 36 35.65455065407403 39.0 35.0 41.0 26.0 41.0 37 35.50097891124538 39.0 35.0 40.0 25.0 41.0 38 35.34737783774271 38.0 35.0 40.0 25.0 41.0 39 35.239525283041004 38.0 35.0 40.0 24.0 41.0 40 35.041114272305975 38.0 34.0 40.0 23.0 41.0 41 34.91884569132399 38.0 34.0 40.0 23.0 41.0 42 34.82189314835455 38.0 34.0 40.0 23.0 41.0 43 34.80693817093917 38.0 34.0 40.0 23.0 41.0 44 34.624387722179854 38.0 34.0 40.0 23.0 41.0 45 34.53139482020297 38.0 34.0 40.0 23.0 41.0 46 34.44228089986508 38.0 34.0 40.0 23.0 41.0 47 34.31311961048865 37.0 33.0 40.0 22.0 41.0 48 34.220339355898396 37.0 33.0 40.0 22.0 41.0 49 34.10212574059952 37.0 33.0 40.0 21.0 41.0 50 33.88437848301754 37.0 33.0 40.0 20.0 41.0 51 31.922387370211766 35.0 30.0 39.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 10.0 9 19.0 10 28.0 11 25.0 12 13.0 13 11.0 14 15.0 15 35.0 16 46.0 17 74.0 18 139.0 19 227.0 20 459.0 21 667.0 22 1031.0 23 1564.0 24 2334.0 25 3570.0 26 4593.0 27 5011.0 28 5129.0 29 5310.0 30 5945.0 31 6870.0 32 8796.0 33 12257.0 34 18684.0 35 22642.0 36 25531.0 37 39657.0 38 49499.0 39 52550.0 40 10.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.01547193054497 18.36686807062826 22.1805889599343 19.437071038892473 2 33.70021118085293 24.075350501554528 25.569015075966444 16.655423241626092 3 31.014621340998417 22.87939226843433 30.506100780195926 15.599885610371325 4 27.023816507303337 24.91054144424239 29.92755323517334 18.138088813280927 5 23.987358479497857 28.985305332316535 28.742960638235466 18.284375549950138 6 25.887986155921862 33.13412917228838 27.563134275825657 13.414750395964099 7 58.813867542676135 27.732152284859506 9.783979585850883 3.6700005866134804 8 80.85733560157212 4.740936821728163 11.274344459435678 3.127383117264035 9 74.92740658180324 6.8839091922332365 13.258564556813516 4.930119669149997 10 42.11004868891887 24.383322578752857 19.929093095559335 13.577535636768934 11 30.811139789992374 24.03428755792808 27.210066287323283 17.944506364756265 12 27.608596820554936 21.98150701003109 31.339091922332372 19.0708042470816 13 24.493679239748932 22.341541033612952 33.16199331260633 20.002786414031796 14 21.250439960110285 24.212104769167595 33.95648794509298 20.580967325629143 15 20.512773508535226 24.070584267026458 35.55794274652431 19.858699477914 16 24.17470815979351 23.658488297061066 32.456590602452046 19.710212940693378 17 25.48285622103596 23.790109696720833 30.035710095617997 20.691323986625214 18 24.95307092156978 23.964993840558456 30.883733208189124 20.19820202968264 19 25.166818208482432 25.093858156860442 29.423798908898924 20.3155247257582 20 26.240320877573765 24.92813984865372 29.93561917052854 18.895920103243974 21 25.85352261394967 24.794685281867775 30.636622279579985 18.71516982460257 22 25.71786824661231 22.4181674194873 31.08941455974658 20.77454977415381 23 24.446750161318707 23.64675602745351 31.36805596292603 20.538437848301754 24 23.345749985334663 23.853903912711914 31.806549539508417 20.993796562445006 25 23.7948759312489 24.778920044582627 29.986214583211122 21.43998944095735 26 22.749970669325982 25.715668446060892 29.564952777614828 21.969408106998298 27 22.674810817152576 24.76352144072271 31.267231770986097 21.29443597113862 28 21.097920455212062 25.755998122836864 31.409118906552475 21.736962515398602 29 22.476462134099844 25.147020003519682 30.573194697014138 21.80332316536634 30 23.049510177743883 23.995424414853055 30.850736199917872 22.104329207485186 31 23.89496685633836 24.114580278054788 30.44963923270957 21.540813632897287 32 24.574338593300872 24.515677245263095 28.843051563324924 22.066932598111105 33 24.035020824778552 25.009899102481377 29.309409280225257 21.645670792514814 34 22.554188420249897 25.558016073209362 30.227459377016487 21.660336129524257 35 22.958951721710566 26.639584677655893 29.265413269196927 21.136050331436618 36 23.73328151580923 26.99815216753681 27.94406640464598 21.324499912007976 37 23.407711034199565 27.782014430691614 27.673857570246962 21.136416964861855 38 23.273523200563147 27.037748577462313 27.416847539156453 22.27188068281809 39 23.386079662110635 26.58715609784713 27.732518918284743 22.294245321757494 40 24.734557400129056 25.478823253358364 28.176511996245672 21.610107350266908 41 21.953642869713146 26.15012905496568 28.724628966973658 23.17159910834751 42 22.320642928374493 25.912917228837916 28.909045579867428 22.85739426292016 43 22.614682935413853 25.730700416495573 28.87458203789523 22.780034610195344 44 22.756203437554994 25.720068047163725 28.4925500087992 23.031178506482078 45 22.203686865724173 25.608978119317182 28.249838681292893 23.93749633366575 46 22.157491054144423 25.87992022056667 28.419589957177216 23.54299876811169 47 21.908913591834338 25.971945210300934 30.051108699477915 22.068032498386813 48 22.315143426995952 25.592112981756323 29.3677039948378 22.72503959640993 49 22.789200445826243 25.01503197043468 29.716372382237346 22.47939520150173 50 21.589942511878924 26.22345574001291 29.310875813926202 22.87572593418197 51 21.603141315187425 25.380565495395086 28.619405173930897 24.396888015486596 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 76.0 1 269.5 2 463.0 3 3398.0 4 6333.0 5 4306.0 6 2279.0 7 2016.5 8 1754.0 9 1677.5 10 1601.0 11 1526.5 12 1452.0 13 1389.5 14 1327.0 15 1303.5 16 1280.0 17 1235.5 18 1191.0 19 1208.0 20 1225.0 21 1241.0 22 1257.0 23 1389.0 24 1521.0 25 1686.0 26 2213.0 27 2575.0 28 2988.5 29 3402.0 30 4081.5 31 4761.0 32 5277.5 33 5794.0 34 6468.0 35 7142.0 36 7766.5 37 8391.0 38 9122.0 39 9853.0 40 10795.5 41 11738.0 42 12599.5 43 13461.0 44 14310.5 45 15160.0 46 16492.0 47 17824.0 48 18136.0 49 18448.0 50 18402.5 51 18357.0 52 17599.5 53 16842.0 54 16412.0 55 15982.0 56 15691.0 57 15400.0 58 14854.0 59 14308.0 60 13607.5 61 12907.0 62 11872.5 63 10838.0 64 9474.5 65 8111.0 66 7109.0 67 6107.0 68 5180.5 69 4254.0 70 3556.5 71 2859.0 72 2366.0 73 1873.0 74 1547.0 75 968.0 76 715.0 77 554.0 78 393.0 79 285.5 80 178.0 81 144.5 82 111.0 83 86.5 84 62.0 85 49.0 86 36.0 87 29.0 88 22.0 89 15.5 90 9.0 91 6.0 92 3.0 93 2.0 94 1.0 95 2.0 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 272752.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.03869376246456 #Duplication Level Percentage of deduplicated Percentage of total 1 68.63634800559561 34.34473198825943 2 11.628138375394204 11.637137103878255 3 6.455148827233352 9.690216460711857 4 3.959597601368419 7.925323671898542 5 2.6908572534779247 6.732349103264418 6 1.9473787902158843 5.846657455387882 7 1.3953885428336132 4.887639398215199 8 1.0597428654501326 4.242251896897269 9 0.6961050656306926 3.1348969385035073 >10 1.5151760477700047 9.387696726130446 >50 0.010989971611465569 0.38751298792532674 >100 0.0036633238704885224 0.36221649202480866 >500 7.326647740977045E-4 0.22070276133495428 >1k 7.326647740977045E-4 1.2006670155680652 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3275 1.2007244676482665 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 602 0.22071332199213936 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 320 0.11732269607555582 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02859740716841673 0.0 2 0.0 0.0 0.0 0.12245556402886139 0.0 3 0.0 0.0 0.0 0.1968821493517921 0.0 4 0.0 0.0 0.0 0.3035724760955007 0.0 5 0.0 0.0 0.0 0.6122778201443069 0.0 6 0.0 0.0 0.0 0.9576465067167244 0.0 7 0.0 0.0 0.0 1.2051240687511 0.0 8 0.0 0.0 0.0 1.6890801900627677 0.0 9 0.0 0.0 0.0 1.99815216753681 0.0 10 0.0 0.0 0.0 2.4773420543204083 0.0 11 0.0 0.0 0.0 2.867073385346395 0.0 12 0.0 0.0 0.0 3.217208306446882 0.0 13 0.0 0.0 0.0 3.393925617410688 0.0 14 0.0 0.0 0.0 3.5031823781310494 0.0 15 0.0 0.0 0.0 3.612439138851411 0.0 16 0.0 0.0 0.0 3.7818237813104947 0.0 17 0.0 0.0 0.0 3.976139496685634 0.0 18 0.0 0.0 0.0 4.188786883322579 0.0 19 0.0 0.0 0.0 4.344606089047926 0.0 20 0.0 0.0 0.0 4.513624098081774 0.0 21 0.0 0.0 0.0 4.71197278113451 0.0 22 0.0 0.0 0.0 4.91472106529008 0.0 23 0.0 0.0 0.0 5.14203378893647 0.0 24 0.0 0.0 0.0 5.320584267026456 0.0 25 0.0 0.0 0.0 5.479703173578929 0.0 26 0.0 0.0 0.0 5.657887018243679 0.0 27 0.0 0.0 0.0 5.846336598815041 0.0 28 0.0 0.0 0.0 6.028920044582624 0.0 29 0.0 0.0 0.0 6.228735261336306 0.0 30 0.0 0.0 0.0 6.492711327506306 0.0 31 0.0 0.0 0.0 6.726990086232181 0.0 32 0.0 0.0 0.0 6.955769343579515 0.0 33 0.0 0.0 0.0 7.156317827183669 0.0 34 0.0 0.0 0.0 7.357232944213058 0.0 35 0.0 0.0 0.0 7.589311902387517 0.0 36 0.0 0.0 0.0 7.808192057253476 0.0 37 0.0 0.0 0.0 8.04833695078313 0.0 38 0.0 0.0 0.0 8.327711620813046 0.0 39 0.0 0.0 0.0 8.787103302633895 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 1355 0.0 42.675274 1 CGTTTTA 220 0.0 41.93182 1 TTCGCAA 35 6.230781E-6 38.571426 14 ACAACGA 30 1.13764065E-4 37.499996 13 TTTACGG 30 1.13764065E-4 37.499996 2 CGGCATT 30 1.13764065E-4 37.499996 25 TAGGATC 30 1.13764065E-4 37.499996 6 GCGGGAT 115 0.0 37.173912 5 CTACGAA 55 2.732122E-9 36.81818 11 AGCTACG 55 2.732122E-9 36.81818 9 CGGGTAT 25 0.0021042977 36.000004 6 GACACGA 25 0.0021042977 36.000004 25 GGGTACG 25 0.0021042977 36.000004 7 CACGCCT 25 0.0021042977 36.000004 28 CGACCAA 25 0.0021042977 36.000004 29 TATGCGG 25 0.0021042977 36.000004 2 GCGATTA 25 0.0021042977 36.000004 9 TTAACGG 25 0.0021042977 36.000004 2 CGTGTAG 25 0.0021042977 36.000004 43 TTAGTAG 25 0.0021042977 36.000004 1 >>END_MODULE