SRR2936540.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936540.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	73941
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	171	0.23126546841400575	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCG	154	0.20827416453659	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	138	0.1866352902990222	No Hit
CCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC	98	0.13253810470510272	RNA PCR Primer, Index 3 (95% over 23bp)
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	91	0.12307109722616683	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTC	83	0.11225166010738293	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGC	83	0.11225166010738293	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCG	20	6.9904746E-4	45.000004	5
CTATGCC	20	6.9904746E-4	45.000004	9
ACTATGC	20	6.9904746E-4	45.000004	8
AGGCGAT	40	6.666596E-9	45.000004	7
ACGGGAC	20	6.9904746E-4	45.000004	5
AATATAC	20	6.9904746E-4	45.000004	16
AACGAGG	20	6.9904746E-4	45.000004	2
AGCGACT	20	6.9904746E-4	45.000004	19
ATTGGGC	20	6.9904746E-4	45.000004	4
CTCGTGT	25	3.855364E-5	45.0	16
TTACACG	25	3.855364E-5	45.0	34
TACACGC	25	3.855364E-5	45.0	35
CGAGGGA	50	1.0531949E-9	40.5	4
GGGGTAA	40	3.4000368E-7	39.375004	7
GTACACT	30	1.1296185E-4	37.499996	18
CTGAGGG	30	1.1296185E-4	37.499996	3
TCTTACA	30	1.1296185E-4	37.499996	32
CCTGTAC	30	1.1296185E-4	37.499996	15
TGTCTTA	30	1.1296185E-4	37.499996	30
TGGGCGA	30	1.1296185E-4	37.499996	6