SRR2936539.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936539.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	51871
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	158	0.30460180062077075	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGC	152	0.29303464363517184	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCG	145	0.27953962715197317	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	131	0.25254959418557577	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC	93	0.1792909332767828	No Hit
GCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	67	0.1291665863391876	No Hit
GAACTTGGGAATTTACCAGAATACAGACACAAAAAGACCAAAATGAATATT	60	0.11567156985598889	No Hit
GGGCAAGGGAACACAAAACAAACATCAACAGATACAAGAACATTGAATTAA	54	0.10410441287039	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAATCTT	20	6.971076E-4	45.000004	31
GAAAATC	20	6.971076E-4	45.000004	29
GGATTGT	20	6.971076E-4	45.000004	8
AGGCGAT	20	6.971076E-4	45.000004	7
CAAAGCC	20	6.971076E-4	45.000004	17
GGGACCC	20	6.971076E-4	45.000004	8
AGTTGAT	20	6.971076E-4	45.000004	43
AAAATCT	20	6.971076E-4	45.000004	30
GGGAATA	40	6.6011125E-9	45.000004	7
CTTTGAG	20	6.971076E-4	45.000004	35
ACGGCTG	20	6.971076E-4	45.000004	8
GGAACCT	20	6.971076E-4	45.000004	9
TTCGGGG	20	6.971076E-4	45.000004	4
CGCAAGG	20	6.971076E-4	45.000004	3
AAGTTGA	20	6.971076E-4	45.000004	42
AACACAA	20	6.971076E-4	45.000004	10
ATGGGCT	35	1.1821976E-7	45.0	5
GGGCACA	25	3.8393355E-5	45.0	7
GCGATGC	25	3.8393355E-5	45.0	9
GGAATAG	25	3.8393355E-5	45.0	8