##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936539.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 51871 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.042663530681885 33.0 31.0 34.0 30.0 34.0 2 32.16864914885003 33.0 31.0 34.0 30.0 34.0 3 32.04865917371942 33.0 31.0 34.0 30.0 34.0 4 35.793256347477396 37.0 35.0 37.0 35.0 37.0 5 35.87422644637659 37.0 35.0 37.0 35.0 37.0 6 35.844922982013074 37.0 35.0 37.0 35.0 37.0 7 26.926028031077095 36.0 11.0 37.0 0.0 37.0 8 31.26538913843959 36.0 19.0 37.0 17.0 37.0 9 36.092652927454644 39.0 32.0 39.0 32.0 39.0 10 36.77658036282316 38.0 35.0 39.0 33.0 39.0 11 37.07776985213318 39.0 37.0 39.0 34.0 39.0 12 36.848759422413295 39.0 35.0 39.0 33.0 39.0 13 36.52991074010526 39.0 35.0 39.0 33.0 39.0 14 37.640531318077535 40.0 36.0 41.0 33.0 41.0 15 37.84347708738987 40.0 36.0 41.0 33.0 41.0 16 37.90563127759249 40.0 35.0 41.0 33.0 41.0 17 37.836131942704014 40.0 35.0 41.0 33.0 41.0 18 37.78544851651212 39.0 36.0 41.0 33.0 41.0 19 37.65689884521216 39.0 36.0 41.0 33.0 41.0 20 37.702222822000735 39.0 35.0 41.0 34.0 41.0 21 37.61760906865108 39.0 35.0 41.0 33.0 41.0 22 37.60455745985232 39.0 35.0 41.0 33.0 41.0 23 37.578492799444774 39.0 35.0 41.0 33.0 41.0 24 37.50575466060034 39.0 35.0 41.0 33.0 41.0 25 37.42902585259586 39.0 35.0 41.0 33.0 41.0 26 37.28746312968711 39.0 35.0 41.0 33.0 41.0 27 37.16448497233522 39.0 35.0 41.0 33.0 41.0 28 37.16028223863045 39.0 35.0 41.0 33.0 41.0 29 37.244124848181066 39.0 35.0 41.0 33.0 41.0 30 37.184573268300205 39.0 35.0 41.0 33.0 41.0 31 37.005783578492796 39.0 35.0 41.0 32.0 41.0 32 36.83393418287675 39.0 35.0 41.0 32.0 41.0 33 36.700873320352414 39.0 35.0 41.0 31.0 41.0 34 36.57945672919357 39.0 35.0 41.0 31.0 41.0 35 36.515721694202924 39.0 35.0 41.0 31.0 41.0 36 36.326020319639106 38.0 35.0 40.0 30.0 41.0 37 36.24823118891095 38.0 35.0 40.0 30.0 41.0 38 36.11416783944786 38.0 35.0 40.0 30.0 41.0 39 36.12436621619016 38.0 35.0 40.0 30.0 41.0 40 35.98376742303021 38.0 35.0 40.0 30.0 41.0 41 35.93763374525265 38.0 35.0 40.0 30.0 41.0 42 35.88317171444545 38.0 35.0 40.0 30.0 41.0 43 35.788745156253015 38.0 35.0 40.0 29.0 41.0 44 35.56858360162711 38.0 35.0 40.0 29.0 41.0 45 35.49615392030229 38.0 34.0 40.0 28.0 41.0 46 35.41433556322415 38.0 34.0 40.0 28.0 41.0 47 35.27747681748954 38.0 34.0 40.0 27.0 41.0 48 35.21844575967304 37.0 34.0 40.0 27.0 41.0 49 35.130766709722195 37.0 34.0 40.0 27.0 41.0 50 34.87413005340171 37.0 34.0 40.0 26.0 41.0 51 32.72402691291859 35.0 31.0 39.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 1.0 10 3.0 11 5.0 12 0.0 13 2.0 14 2.0 15 2.0 16 5.0 17 10.0 18 17.0 19 25.0 20 46.0 21 92.0 22 139.0 23 192.0 24 273.0 25 390.0 26 505.0 27 648.0 28 740.0 29 843.0 30 1061.0 31 1333.0 32 1773.0 33 2557.0 34 4504.0 35 6144.0 36 4406.0 37 6930.0 38 9233.0 39 9987.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.34817142526653 20.169266063889264 24.406701239613657 15.075861271230554 2 28.243141639837287 27.597308708141348 28.127470069981296 16.03207958204006 3 30.895876308534636 25.33592951745677 27.693701683021345 16.074492490987257 4 28.518825547994066 25.048678452314395 27.67827880704054 18.754217192650998 5 26.88400069402942 29.25912359507239 25.748491449943128 18.108384260955063 6 26.0453818125735 35.26633378959341 24.936862601453605 13.751421796379478 7 60.60033544755258 28.23735806134449 6.77449827456575 4.387808216537178 8 83.3567889572208 5.5194617416282705 7.4974455861656795 3.6263037149852515 9 79.198396020898 6.440978581480981 8.659944863218369 5.700680534402653 10 48.653390140926525 22.259065759287463 15.606022633070502 13.481521466715506 11 40.67783539935609 25.459312525303158 20.539415087428427 13.323436987912322 12 36.573422528966084 23.463977945287347 24.233193884829674 15.729405640916891 13 24.92143972547281 32.2877908658017 25.893080912263116 16.89768849646238 14 17.81534961731989 36.209057083919724 27.373677006419772 18.601916292340615 15 16.90925565344798 27.0459408918278 40.296119218831336 15.748684235892888 16 19.41740085982534 22.127971313450676 38.788533091708274 19.66609473501571 17 18.84675444853579 22.08363054500588 30.516087987507472 28.55352701895086 18 23.379152127392956 24.429835553584855 30.660677449827457 21.530334869194732 19 26.309498563744675 26.27479709278788 26.95533149544061 20.460372848026836 20 28.61329066337645 25.70993425999113 27.040157313335005 18.636617763297412 21 23.86111700179291 27.379460584912575 28.275915251296485 20.483507161998034 22 21.709625802471518 24.720942337722427 28.514969828998865 25.054462030807194 23 21.081143606253978 28.1120471940005 26.939908619459814 23.86690058028571 24 21.80987449634671 24.879026816525613 31.53014208324497 21.78095660388271 25 19.561990322145324 25.42653891384396 32.15476856046731 22.856702203543406 26 19.452102330782132 31.001908580902626 28.52846484548206 21.017524242833183 27 20.51435291395963 31.913786123267336 28.106263615507704 19.46559734726533 28 16.28077345723044 29.409496635885173 34.3775905611999 19.932139345684487 29 19.17641842262536 27.362109849434173 32.16247999845771 21.298991729482754 30 21.792523760868306 28.181450135914094 30.257754814829095 19.768271288388505 31 25.079524204275994 28.923676042490023 25.10458637774479 20.892213375489195 32 26.793391297642227 31.77112452044495 23.733878274951323 17.7016059069615 33 26.39046866264387 29.68325268454435 24.26596749628887 19.660311156522916 34 20.550982244414026 30.670316747315457 26.814597752115827 21.96410325615469 35 20.714850301710012 29.51552890825317 27.491276435773358 22.27834435426346 36 26.0376703745831 28.042644252086905 26.722060496231038 19.197624877098956 37 23.194077615623375 29.216710686125197 28.52460912648686 19.06460257176457 38 21.443581191802743 30.670316747315457 25.156638584179987 22.729463476701817 39 22.409438800100247 28.23157448285169 27.880704054288525 21.478282662759536 40 24.26596749628887 27.221376106109386 27.884559773283723 20.628096624318022 41 19.839602089799698 26.074299705037497 27.400667039386168 26.68543116577664 42 23.134313971197777 26.95147577644541 27.078714503287 22.83549574906981 43 25.10265851824719 26.79917487613503 25.947060978195907 22.151105627421874 44 22.104836999479478 29.731449171984348 27.1095602552486 21.05415357328758 45 20.250236162788458 31.44338840585298 24.321875421719266 23.984500009639298 46 23.167087582656976 30.321374178249886 25.495941855757554 21.015596383335584 47 21.35489965491315 28.84656166258603 28.401226118640473 21.397312563860346 48 23.35987353241696 26.006824622621505 28.326039598234082 22.307262246727458 49 21.919762487709896 23.296254168996164 30.438973607603476 24.34500973569046 50 19.8049006188429 28.526536985984464 28.370380366678877 23.298182028493763 51 19.895510015230087 29.636984056601957 25.474735401283954 24.992770526884 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 26.0 1 52.0 2 78.0 3 201.0 4 324.0 5 234.5 6 145.0 7 143.0 8 141.0 9 125.0 10 109.0 11 109.5 12 110.0 13 127.0 14 144.0 15 134.0 16 124.0 17 133.5 18 143.0 19 150.5 20 158.0 21 194.5 22 231.0 23 233.5 24 236.0 25 324.0 26 481.5 27 551.0 28 634.0 29 717.0 30 796.0 31 875.0 32 945.5 33 1016.0 34 1176.5 35 1337.0 36 1503.5 37 1670.0 38 1847.5 39 2025.0 40 2478.5 41 2932.0 42 3443.0 43 3954.0 44 4338.0 45 4722.0 46 5142.0 47 5562.0 48 5175.0 49 4788.0 50 4479.0 51 4170.0 52 3795.5 53 3421.0 54 3022.5 55 2624.0 56 2376.5 57 2129.0 58 2043.5 59 1958.0 60 1887.5 61 1817.0 62 1620.0 63 1423.0 64 1103.0 65 783.0 66 584.5 67 386.0 68 329.0 69 272.0 70 218.5 71 165.0 72 126.5 73 88.0 74 74.5 75 43.0 76 25.0 77 14.5 78 4.0 79 6.0 80 8.0 81 5.5 82 3.0 83 3.0 84 3.0 85 2.0 86 1.0 87 0.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 51871.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.68641437412042 #Duplication Level Percentage of deduplicated Percentage of total 1 69.6430078487636 31.817393148387346 2 9.713899907165162 8.875865126949547 3 5.105916111064225 6.998129976287328 4 3.5150645624103296 6.423627846002583 5 2.865220693729429 6.545082994351372 6 2.0128280867583763 5.51753388213067 7 1.721664275466284 5.505966725145071 8 1.3207865642670267 4.8273601819899365 9 1.0169634568318002 4.181527250293999 >10 3.0508903704954005 17.649553700526305 >50 0.016879061524179256 0.5282335023423493 >100 0.016879061524179256 1.1297256655934915 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 158 0.30460180062077075 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGC 152 0.29303464363517184 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCG 145 0.27953962715197317 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 131 0.25254959418557577 No Hit GAATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC 93 0.1792909332767828 No Hit GCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC 67 0.1291665863391876 No Hit GAACTTGGGAATTTACCAGAATACAGACACAAAAAGACCAAAATGAATATT 60 0.11567156985598889 No Hit GGGCAAGGGAACACAAAACAAACATCAACAGATACAAGAACATTGAATTAA 54 0.10410441287039 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1291665863391876 0.0 2 0.0 0.0 0.0 0.5879971467679436 0.0 3 0.0 0.0 0.0 0.7653602205471265 0.0 4 0.0 0.0 0.0 1.0024869387519038 0.0 5 0.0 0.0 0.0 1.7659192998014304 0.0 6 0.0 0.0 0.0 2.1379961828381946 0.0 7 0.0 0.0 0.0 2.5158566443677586 0.0 8 0.0 0.0 0.0 3.2445875344604884 0.0 9 0.0 0.0 0.0 3.518343583119662 0.0 10 0.0 0.0 0.0 4.58830560428756 0.0 11 0.0 0.0 0.0 5.502111006149872 0.0 12 0.0 0.0 0.0 6.543155134853772 0.0 13 0.0 0.0 0.0 6.919087736885736 0.0 14 0.0 0.0 0.0 7.092595091669719 0.0 15 0.0 0.0 0.0 7.3779182973144914 0.0 16 0.0 0.0 0.0 7.904223940159241 0.0 17 0.0 0.0 0.0 8.482581789439186 0.0 18 0.0 0.0 0.0 9.201673382043916 0.0 19 0.0 0.0 0.0 9.58146170307108 0.0 20 0.0 0.0 0.0 9.926548553141448 0.0 21 0.0 0.0 0.0 10.364172659096605 0.0 22 0.0 0.0 0.0 10.857704690482157 0.0 23 0.0 0.0 0.0 11.35509244086291 0.0 24 0.0 0.0 0.0 11.756087216363671 0.0 25 0.0 0.0 0.0 12.054905438491643 0.0 26 0.0 0.0 0.0 12.346012222629215 0.0 27 0.0 0.0 0.0 12.679531915713984 0.0 28 0.0 0.0 0.0 12.993773013822752 0.0 29 0.0 0.0 0.0 13.348499161381119 0.0 30 0.0 0.0 0.0 13.728287482408282 0.0 31 0.0 0.0 0.0 14.07723005147385 0.0 32 0.0 0.0 0.0 14.445451215515414 0.0 33 0.0 0.0 0.0 14.78282662759538 0.0 34 0.0 0.0 0.0 15.141408494148946 0.0 35 0.0 0.0 0.0 15.540475410152109 0.0 36 0.0 0.0 0.0 15.964604499624068 0.0 37 0.0 0.0 0.0 16.340537101656032 0.0 38 0.0 0.0 0.0 16.716469703687995 0.0 39 0.0 0.0 0.0 17.036494380289565 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAATCTT 20 6.971076E-4 45.000004 31 GAAAATC 20 6.971076E-4 45.000004 29 GGATTGT 20 6.971076E-4 45.000004 8 AGGCGAT 20 6.971076E-4 45.000004 7 CAAAGCC 20 6.971076E-4 45.000004 17 GGGACCC 20 6.971076E-4 45.000004 8 AGTTGAT 20 6.971076E-4 45.000004 43 AAAATCT 20 6.971076E-4 45.000004 30 GGGAATA 40 6.6011125E-9 45.000004 7 CTTTGAG 20 6.971076E-4 45.000004 35 ACGGCTG 20 6.971076E-4 45.000004 8 GGAACCT 20 6.971076E-4 45.000004 9 TTCGGGG 20 6.971076E-4 45.000004 4 CGCAAGG 20 6.971076E-4 45.000004 3 AAGTTGA 20 6.971076E-4 45.000004 42 AACACAA 20 6.971076E-4 45.000004 10 ATGGGCT 35 1.1821976E-7 45.0 5 GGGCACA 25 3.8393355E-5 45.0 7 GCGATGC 25 3.8393355E-5 45.0 9 GGAATAG 25 3.8393355E-5 45.0 8 >>END_MODULE