SRR2936534.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936534.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	255458
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	756	0.2959390584753658	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCG	676	0.2646227559912001	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTC	643	0.25170478121648177	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGC	441	0.1726311174439634	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCAAGAG	20	7.022975E-4	45.000004	1
TACACGG	20	7.022975E-4	45.000004	2
ACGACAT	20	7.022975E-4	45.000004	42
CGAATAT	25	3.8822625E-5	45.0	14
TCAAGCG	25	3.8822625E-5	45.0	17
AACACGT	25	3.8822625E-5	45.0	41
CGTTTTT	335	0.0	41.641792	1
AGCGACT	55	6.002665E-11	40.909092	19
AGGCGAT	90	0.0	40.0	7
TCATGCA	45	1.9183062E-8	40.0	24
AGTACGG	45	1.9183062E-8	40.0	2
CAAGCTT	40	3.4441655E-7	39.375004	22
GCGATCA	35	6.2292274E-6	38.57143	9
CGCACTT	35	6.2292274E-6	38.57143	35
AAGGATC	35	6.2292274E-6	38.57143	6
CGACCAA	30	1.137438E-4	37.500004	29
TCGATCA	30	1.137438E-4	37.500004	17
CGAGACA	30	1.137438E-4	37.500004	22
CGCACGG	30	1.137438E-4	37.500004	2
CGCACGA	30	1.137438E-4	37.500004	40