##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936534.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 255458 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.04654385456709 33.0 31.0 34.0 30.0 34.0 2 32.17099484063917 33.0 31.0 34.0 30.0 34.0 3 32.044899748686674 33.0 31.0 34.0 30.0 34.0 4 35.79460811561979 37.0 35.0 37.0 35.0 37.0 5 35.87039356763147 37.0 35.0 37.0 35.0 37.0 6 35.82597139255768 37.0 35.0 37.0 35.0 37.0 7 26.751736097518965 35.0 10.0 37.0 0.0 37.0 8 31.09788301795207 35.0 19.0 37.0 17.0 37.0 9 35.94851991325384 39.0 32.0 39.0 32.0 39.0 10 36.70883667765347 38.0 35.0 39.0 33.0 39.0 11 37.04042543196925 39.0 37.0 39.0 34.0 39.0 12 37.06783894025632 39.0 37.0 39.0 34.0 39.0 13 37.01570512569581 39.0 37.0 39.0 33.0 39.0 14 38.213549781177335 40.0 37.0 41.0 33.0 41.0 15 38.27025577590054 40.0 37.0 41.0 33.0 41.0 16 38.21203876958248 40.0 37.0 41.0 33.0 41.0 17 38.09948406391657 40.0 37.0 41.0 33.0 41.0 18 37.989285910012605 40.0 37.0 41.0 33.0 41.0 19 37.8578279012597 40.0 37.0 41.0 33.0 41.0 20 37.9559457914804 40.0 36.0 41.0 33.0 41.0 21 37.8652694376375 40.0 36.0 41.0 33.0 41.0 22 37.88477557954732 40.0 36.0 41.0 33.0 41.0 23 37.83837264834141 40.0 36.0 41.0 33.0 41.0 24 37.7593028991067 40.0 36.0 41.0 33.0 41.0 25 37.639850777818666 40.0 36.0 41.0 33.0 41.0 26 37.52381604803921 40.0 36.0 41.0 33.0 41.0 27 37.41053715287836 39.0 35.0 41.0 33.0 41.0 28 37.3869638061834 39.0 36.0 41.0 33.0 41.0 29 37.36273673167409 40.0 35.0 41.0 33.0 41.0 30 37.23351392401099 39.0 35.0 41.0 32.0 41.0 31 37.11068355659247 39.0 35.0 41.0 32.0 41.0 32 36.957965692990626 39.0 35.0 41.0 31.0 41.0 33 36.818572916095796 39.0 35.0 41.0 31.0 41.0 34 36.60855013348574 39.0 35.0 41.0 30.0 41.0 35 36.45648208316044 39.0 35.0 41.0 30.0 41.0 36 36.35141197378825 39.0 35.0 41.0 30.0 41.0 37 36.28012824025867 39.0 35.0 41.0 30.0 41.0 38 36.10448684323842 39.0 35.0 40.0 29.0 41.0 39 36.0545843152299 39.0 35.0 40.0 29.0 41.0 40 35.82280061693116 38.0 35.0 40.0 28.0 41.0 41 35.73800389887966 38.0 35.0 40.0 28.0 41.0 42 35.65215025561932 38.0 35.0 40.0 27.0 41.0 43 35.624768063634725 38.0 35.0 40.0 27.0 41.0 44 35.44130542006905 38.0 34.0 40.0 27.0 41.0 45 35.31559003828418 38.0 34.0 40.0 26.0 41.0 46 35.14621581629857 38.0 34.0 40.0 26.0 41.0 47 34.997651277313686 38.0 34.0 40.0 25.0 41.0 48 34.911793719515536 37.0 34.0 40.0 25.0 41.0 49 34.76057512389512 37.0 34.0 40.0 24.0 41.0 50 34.56048743824817 37.0 34.0 40.0 24.0 41.0 51 32.429362165209156 35.0 30.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 13.0 9 21.0 10 31.0 11 23.0 12 11.0 13 10.0 14 17.0 15 20.0 16 40.0 17 71.0 18 120.0 19 260.0 20 367.0 21 549.0 22 785.0 23 1099.0 24 1563.0 25 2251.0 26 2673.0 27 3242.0 28 3778.0 29 4262.0 30 5230.0 31 6617.0 32 8532.0 33 11953.0 34 18447.0 35 21973.0 36 24674.0 37 38673.0 38 48011.0 39 50134.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.527538773497014 18.56782719664289 23.022962678796517 15.88167135106358 2 29.59116567106922 25.983136171112275 26.53547745617675 17.890220701641756 3 31.277548559841538 24.98414612186739 26.991129657321363 16.74717566096971 4 27.971329925075743 25.354852852523702 27.383366345935535 19.290450876465016 5 26.154984380994133 29.298358242842266 24.954787088288484 19.59187028787511 6 27.370056917379763 34.254163110961485 24.05640066077398 14.319379310884765 7 61.105543768447255 28.11890800053238 6.782328210508186 3.993220020512178 8 82.95062202005809 5.589568539642524 7.699895873294241 3.759913567005144 9 77.14223081680746 6.973357655661597 9.473964409022226 6.410447118508718 10 43.95360489786971 24.6361437105121 16.151383006208455 15.258868385409736 11 32.219777810833875 24.64162406344683 23.784340282942793 19.354257842776505 12 28.46730186566872 22.490976990346752 28.394100008611982 20.647621135372546 13 24.806817559050803 23.727970938471294 30.625386560608792 20.839824941869114 14 21.556185361194405 26.12758261632049 30.43670583814169 21.879526184343415 15 20.62961426144415 24.151523929569635 33.80203399384635 21.416827815139865 16 24.57194529041956 24.884325407699112 29.499956940084083 21.04377236179724 17 25.373251180233147 24.386004744419825 27.595142841484705 22.645601233862315 18 26.476759389018937 23.52089188829475 28.651285142763193 21.351063579923117 19 25.7893665494915 26.223097338897194 26.132671515474172 21.854864596137134 20 28.51114468914655 25.479726608679314 26.418824229423233 19.5903044727509 21 26.670529010639715 26.106444112143677 27.2350053629168 19.988021514299806 22 27.46713745508068 22.488236813879386 27.237354085603112 22.807271645436824 23 25.140336180507166 24.845180029593905 27.800656076537045 22.213827713361884 24 25.028771852907326 23.0484071745649 29.01886024317109 22.903960729356683 25 24.043874139780318 25.870006028388225 27.315253388032474 22.770866443798983 26 23.809784778711176 25.71499033109161 26.707717119839657 23.767507770357554 27 23.353741123785515 25.71538178487266 28.05314376531563 22.877733326026195 28 21.075871571843514 26.935151766630916 28.62466628565165 23.36431037587392 29 23.699394812454493 24.887065584166475 27.81279114374966 23.600748459629372 30 24.135082870765448 24.477996382967063 28.6994339578326 22.687486788434892 31 25.14072763428822 24.578208550916393 27.379451808125015 22.901612006670373 32 25.467200087685647 24.65297622309734 27.83197237902121 22.047851310195803 33 25.87587783510401 24.891763029539103 26.579711733435634 22.652647401921257 34 24.08458533300973 25.062045424296752 28.682601445247357 22.170767797446157 35 23.31107266165084 26.496723531852595 28.06449592496614 22.12770788153043 36 24.943434928637977 26.886220043999405 26.365977968981202 21.804367058381416 37 24.13860595479492 26.89287475827729 27.30468413594407 21.663835150983722 38 24.18323168583485 26.873302069224685 26.521385120058877 22.422081124881586 39 24.730092617964598 25.311792936607976 27.17824456466425 22.77986988076318 40 25.83086065028302 24.587994895442694 27.16532658988953 22.415817864384753 41 22.280374856140735 25.825771751129345 26.834939598681583 25.058913794048337 42 23.027660124169138 25.47385480196353 27.640551480086746 23.857933593780583 43 23.832880551793252 23.82583438373431 27.39158687533763 24.949698189134807 44 23.287585434787715 23.88416099711107 28.116950731627117 24.711302836474097 45 23.63245621589459 24.518707576196476 27.23813699316522 24.610699214743715 46 23.504450829490562 25.91815484345763 26.50181243100627 24.075581896045534 47 22.424429847567897 25.561148995138144 28.619185932716924 23.395235224577036 48 23.13570136773951 24.744967861644575 28.68455871415262 23.434772056463295 49 23.668469963751377 24.308888349552568 28.726835722506245 23.29580596418981 50 21.929240814537028 25.621432877420165 28.58630381510855 23.86302249293426 51 22.569267746557166 24.606393223152143 27.090167463927532 25.734171566363162 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 67.0 1 235.0 2 403.0 3 1021.5 4 1640.0 5 1141.5 6 643.0 7 572.5 8 502.0 9 499.5 10 497.0 11 541.5 12 586.0 13 537.0 14 488.0 15 504.5 16 521.0 17 533.0 18 545.0 19 585.0 20 625.0 21 719.5 22 814.0 23 931.5 24 1049.0 25 1297.0 26 1866.0 27 2187.0 28 2598.0 29 3009.0 30 3512.0 31 4015.0 32 4481.0 33 4947.0 34 5941.5 35 6936.0 36 7472.0 37 8008.0 38 8872.0 39 9736.0 40 10516.5 41 11297.0 42 12419.5 43 13542.0 44 14575.0 45 15608.0 46 17594.5 47 19581.0 48 19143.0 49 18705.0 50 18555.0 51 18405.0 52 17724.0 53 17043.0 54 16245.5 55 15448.0 56 14973.0 57 14498.0 58 14147.0 59 13796.0 60 13334.5 61 12873.0 62 11622.5 63 10372.0 64 9412.0 65 8452.0 66 7394.0 67 6336.0 68 5259.5 69 4183.0 70 3397.5 71 2612.0 72 2116.0 73 1620.0 74 1370.0 75 838.5 76 557.0 77 424.5 78 292.0 79 226.0 80 160.0 81 121.0 82 82.0 83 67.0 84 52.0 85 38.0 86 24.0 87 19.5 88 15.0 89 12.5 90 10.0 91 8.0 92 6.0 93 3.5 94 1.0 95 2.0 96 3.0 97 2.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 255458.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.33892925211225 #Duplication Level Percentage of deduplicated Percentage of total 1 61.71186343825351 26.128142201282284 2 12.796385770523289 10.83570543641843 3 7.351951112878751 9.338212140994843 4 4.880923459540436 8.266122921538301 5 3.45506778527431 7.314193526099058 6 2.4360345428509507 6.188345649928081 7 1.9226271792782195 5.698138328515407 8 1.4580670378997196 4.938639772997848 9 1.1334949940724637 4.319186792549169 >10 2.8257932491706432 14.964587540538993 >50 0.015880817290101424 0.4580566948033404 >100 0.008932959725682052 0.6786803322086189 >500 0.002977653241894017 0.8719886621256249 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 756 0.2959390584753658 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCG 676 0.2646227559912001 No Hit GAATCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTC 643 0.25170478121648177 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGC 441 0.1726311174439634 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.053629168004133754 0.0 2 0.0 0.0 0.0 0.27793218454697055 0.0 3 0.0 0.0 0.0 0.3757956298099883 0.0 4 0.0 0.0 0.0 0.5699567052118156 0.0 5 0.0 0.0 0.0 1.2561751833960964 0.0 6 0.0 0.0 0.0 1.6123981241534813 0.0 7 0.0 0.0 0.0 1.9533543674498353 0.0 8 0.0 0.0 0.0 2.5123503667921927 0.0 9 0.0 0.0 0.0 2.773058584972872 0.0 10 0.0 0.0 0.0 3.5829764579696075 0.0 11 0.0 0.0 0.0 4.130228843880403 0.0 12 0.0 0.0 0.0 4.7964831792310285 0.0 13 0.0 0.0 0.0 5.001604960502314 0.0 14 0.0 0.0 0.0 5.104557304919008 0.0 15 0.0 0.0 0.0 5.2944123887292625 0.0 16 0.0 0.0 0.0 5.576259111086754 0.0 17 0.0 0.0 0.0 5.927784606471514 0.0 18 0.0 0.0 0.0 6.306320412748867 0.0 19 0.0 0.0 0.0 6.560373916651661 0.0 20 0.0 0.0 0.0 6.8054239835902575 0.0 21 0.0 0.0 0.0 7.119761369775071 0.0 22 0.0 0.0 0.0 7.45406289879354 0.0 23 0.0 0.0 0.0 7.761354116919415 0.0 24 0.0 0.0 0.0 8.016581982165366 0.0 25 0.0 0.0 0.0 8.235013191992422 0.0 26 0.0 0.0 0.0 8.460099116097362 0.0 27 0.0 0.0 0.0 8.687925216669667 0.0 28 0.0 0.0 0.0 8.928277838235639 0.0 29 0.0 0.0 0.0 9.16080138418057 0.0 30 0.0 0.0 0.0 9.457914803999092 0.0 31 0.0 0.0 0.0 9.70883667765347 0.0 32 0.0 0.0 0.0 9.984420139514128 0.0 33 0.0 0.0 0.0 10.246302719037963 0.0 34 0.0 0.0 0.0 10.522669088460725 0.0 35 0.0 0.0 0.0 10.806864533504529 0.0 36 0.0 0.0 0.0 11.0945830625778 0.0 37 0.0 0.0 0.0 11.399134104236312 0.0 38 0.0 0.0 0.0 11.701727876989564 0.0 39 0.0 0.0 0.0 12.106491086597405 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCAAGAG 20 7.022975E-4 45.000004 1 TACACGG 20 7.022975E-4 45.000004 2 ACGACAT 20 7.022975E-4 45.000004 42 CGAATAT 25 3.8822625E-5 45.0 14 TCAAGCG 25 3.8822625E-5 45.0 17 AACACGT 25 3.8822625E-5 45.0 41 CGTTTTT 335 0.0 41.641792 1 AGCGACT 55 6.002665E-11 40.909092 19 AGGCGAT 90 0.0 40.0 7 TCATGCA 45 1.9183062E-8 40.0 24 AGTACGG 45 1.9183062E-8 40.0 2 CAAGCTT 40 3.4441655E-7 39.375004 22 GCGATCA 35 6.2292274E-6 38.57143 9 CGCACTT 35 6.2292274E-6 38.57143 35 AAGGATC 35 6.2292274E-6 38.57143 6 CGACCAA 30 1.137438E-4 37.500004 29 TCGATCA 30 1.137438E-4 37.500004 17 CGAGACA 30 1.137438E-4 37.500004 22 CGCACGG 30 1.137438E-4 37.500004 2 CGCACGA 30 1.137438E-4 37.500004 40 >>END_MODULE