FastQCFastQC Report
Sat 14 Jan 2017
SRR2936533.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936533.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences230065
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23041.0014561102297177No Hit
GAATCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTC6380.2773129333014583No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCG5350.23254297698476517No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGC4490.19516223675917677No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4190.18212244365722732No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2530.10996892182644036No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGGGCG351.2062628E-745.05
TTAGGAC207.021514E-445.05
CACGGGT253.8810504E-545.04
CGACCTA207.021514E-445.044
CGACCAA351.2062628E-745.029
AGGCGAT700.045.07
CACTACG207.021514E-445.039
TAGGCGA253.8810504E-545.06
TAAGCGG253.8810504E-545.02
TCGACGG253.8810504E-545.02
CGTTTTT10450.043.7081341
CGTTTTA2000.042.751
AAACGGG501.0732037E-940.53
TACGAAT501.0732037E-940.512
GTCAAGC501.0732037E-940.516
GCTACGA451.916851E-840.010
TCGCGGG451.916851E-840.03
TGACTAT451.916851E-840.023
CACCGGC403.4421646E-739.37519
CGTCATA403.4421646E-739.37538