SRR2936533.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936533.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	230065
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2304	1.0014561102297177	No Hit
GAATCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTC	638	0.2773129333014583	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCG	535	0.23254297698476517	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGC	449	0.19516223675917677	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	419	0.18212244365722732	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	253	0.10996892182644036	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCG	35	1.2062628E-7	45.0	5
TTAGGAC	20	7.021514E-4	45.0	5
CACGGGT	25	3.8810504E-5	45.0	4
CGACCTA	20	7.021514E-4	45.0	44
CGACCAA	35	1.2062628E-7	45.0	29
AGGCGAT	70	0.0	45.0	7
CACTACG	20	7.021514E-4	45.0	39
TAGGCGA	25	3.8810504E-5	45.0	6
TAAGCGG	25	3.8810504E-5	45.0	2
TCGACGG	25	3.8810504E-5	45.0	2
CGTTTTT	1045	0.0	43.708134	1
CGTTTTA	200	0.0	42.75	1
AAACGGG	50	1.0732037E-9	40.5	3
TACGAAT	50	1.0732037E-9	40.5	12
GTCAAGC	50	1.0732037E-9	40.5	16
GCTACGA	45	1.916851E-8	40.0	10
TCGCGGG	45	1.916851E-8	40.0	3
TGACTAT	45	1.916851E-8	40.0	23
CACCGGC	40	3.4421646E-7	39.375	19
CGTCATA	40	3.4421646E-7	39.375	38