Basic Statistics
Measure | Value |
---|---|
Filename | SRR2936533.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 230065 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2304 | 1.0014561102297177 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTC | 638 | 0.2773129333014583 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCG | 535 | 0.23254297698476517 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGC | 449 | 0.19516223675917677 | No Hit |
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 419 | 0.18212244365722732 | No Hit |
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 253 | 0.10996892182644036 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATGGGCG | 35 | 1.2062628E-7 | 45.0 | 5 |
TTAGGAC | 20 | 7.021514E-4 | 45.0 | 5 |
CACGGGT | 25 | 3.8810504E-5 | 45.0 | 4 |
CGACCTA | 20 | 7.021514E-4 | 45.0 | 44 |
CGACCAA | 35 | 1.2062628E-7 | 45.0 | 29 |
AGGCGAT | 70 | 0.0 | 45.0 | 7 |
CACTACG | 20 | 7.021514E-4 | 45.0 | 39 |
TAGGCGA | 25 | 3.8810504E-5 | 45.0 | 6 |
TAAGCGG | 25 | 3.8810504E-5 | 45.0 | 2 |
TCGACGG | 25 | 3.8810504E-5 | 45.0 | 2 |
CGTTTTT | 1045 | 0.0 | 43.708134 | 1 |
CGTTTTA | 200 | 0.0 | 42.75 | 1 |
AAACGGG | 50 | 1.0732037E-9 | 40.5 | 3 |
TACGAAT | 50 | 1.0732037E-9 | 40.5 | 12 |
GTCAAGC | 50 | 1.0732037E-9 | 40.5 | 16 |
GCTACGA | 45 | 1.916851E-8 | 40.0 | 10 |
TCGCGGG | 45 | 1.916851E-8 | 40.0 | 3 |
TGACTAT | 45 | 1.916851E-8 | 40.0 | 23 |
CACCGGC | 40 | 3.4421646E-7 | 39.375 | 19 |
CGTCATA | 40 | 3.4421646E-7 | 39.375 | 38 |