SRR2936531.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936531.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	91809
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	222	0.24180635885370713	No Hit
CCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC	154	0.16773954623185092	Illumina PCR Primer Index 5 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTCGT	20	6.999381E-4	45.000004	30
ATGGGTG	20	6.999381E-4	45.000004	5
GGGTGAC	20	6.999381E-4	45.000004	7
AAATCAT	20	6.999381E-4	45.000004	38
GGGTACT	20	6.999381E-4	45.000004	7
GACCGAT	20	6.999381E-4	45.000004	9
ATGCTTT	20	6.999381E-4	45.000004	31
TTCGTCT	20	6.999381E-4	45.000004	17
AATGGGT	20	6.999381E-4	45.000004	4
TATTAGG	20	6.999381E-4	45.000004	3
GCGATGT	20	6.999381E-4	45.000004	9
GCGATGC	20	6.999381E-4	45.000004	9
CCCTTCG	20	6.999381E-4	45.000004	29
CTTTAAC	20	6.999381E-4	45.000004	34
ATACGGG	20	6.999381E-4	45.000004	2
TTACCAG	20	6.999381E-4	45.000004	40
TAATGGG	40	6.697519E-9	45.000004	3
ATCTGCC	20	6.999381E-4	45.000004	38
TACAAAT	20	6.999381E-4	45.000004	26
AGGCGAT	25	3.862731E-5	45.0	7