SRR2936530.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936530.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	135349
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTCACCAACTCGTATGCCG	327	0.24159764756296687	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCACCAACTCGTATGCCGTCTTC	271	0.20022312687940066	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCACCAACTCGTATGC	261	0.19283481961447813	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	179	0.13225070004211334	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	172	0.12707888495666758	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCCGC	25	3.8725226E-5	45.000004	17
AGCGACT	25	3.8725226E-5	45.000004	19
ACGAGCG	25	3.8725226E-5	45.000004	16
ACTATGC	20	7.0112164E-4	45.0	8
GCCCTCG	20	7.0112164E-4	45.0	13
TGCGTAG	20	7.0112164E-4	45.0	2
ACTTATA	50	1.0659278E-9	40.500004	7
ACAAGGA	35	6.2075214E-6	38.571426	4
ACAACGA	30	1.1346071E-4	37.499996	13
ACACAAC	30	1.1346071E-4	37.499996	11
AGGGTCC	30	1.1346071E-4	37.499996	7
TAACGGG	30	1.1346071E-4	37.499996	3
TGCATGG	30	1.1346071E-4	37.499996	2
CTTGCGG	30	1.1346071E-4	37.499996	2
CGCTAGG	30	1.1346071E-4	37.499996	2
GAGCGAC	30	1.1346071E-4	37.499996	18
CGGGCTC	30	1.1346071E-4	37.499996	6
AACGAGC	30	1.1346071E-4	37.499996	15
ATACGAA	30	1.1346071E-4	37.499996	19
CACAACG	30	1.1346071E-4	37.499996	12