SRR2936526.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936526.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	105562
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCG	190	0.1799890111972111	No Hit
GCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGC	170	0.16104279949224154	TruSeq Adapter, Index 23 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	144	0.13641272427578105	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGC	140	0.13262348193478712	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTC	128	0.12125575491180539	TruSeq Adapter, Index 23 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGC	123	0.116519201985563	TruSeq Adapter, Index 23 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCCCG	20	7.004176E-4	45.0	14
AGCCCGA	20	7.004176E-4	45.0	15
TATGCCA	20	7.004176E-4	45.0	10
TGTGCGG	25	3.8666964E-5	45.0	2
ACGGGCT	20	7.004176E-4	45.0	5
TCGGAGC	20	7.004176E-4	45.0	36
GATTGGG	35	1.1979682E-7	45.0	3
CGAGATA	25	3.8666964E-5	45.0	19
AAGCGGG	55	6.002665E-11	40.909092	3
GGCGATA	40	3.4185905E-7	39.375	8
TGGGAAC	40	3.4185905E-7	39.375	6
GGACAGC	40	3.4185905E-7	39.375	8
TGACGGG	35	6.194541E-6	38.571426	3
AAGGCGA	35	6.194541E-6	38.571426	6
TGATGGG	95	0.0	37.894737	3
ATTTAGC	60	1.5279511E-10	37.499996	20
ATGGGAT	60	1.5279511E-10	37.499996	5
ATAGGGT	30	1.1329129E-4	37.499996	5
ATAGGAG	30	1.1329129E-4	37.499996	5
CACGGGA	30	1.1329129E-4	37.499996	4