FastQCFastQC Report
Sat 14 Jan 2017
SRR2936521.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936521.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences207912
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCG30001.4429181576820964No Hit
GAATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTC22731.0932509908038017No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC22451.0797837546654354No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCG7170.344857439686021No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6610.31792296740928855No Hit
GAACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCT5560.26742083189041516No Hit
GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC5490.26405402285582363No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCT5430.2611681865404594No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC4900.23567663242140907No Hit
GAATCTATCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTC4580.22028550540613337No Hit
GAATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTT4120.19816076032167454No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTC3830.18421255146408097No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTA2260.1086998345453846No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTT2130.10244718919542883No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTACGGG207.019945E-445.0000043
GCTACGA207.019945E-445.00000410
CGGGTAT253.8797523E-545.06
GCGATTG253.8797523E-545.09
TTGGGTA253.8797523E-545.05
TTAATCG302.1568994E-644.99999620
AATCGTT302.1568994E-644.99999622
TAATCGT302.1568994E-644.99999621
TGATACC3350.043.6567154
TACGGCT3000.042.757
ACGGCTG3600.042.58
GACACGA650.041.5384625
AAACACG650.041.5384640
TCAAGCG650.041.5384617
TGGTCAA650.041.5384614
ACGACCA650.041.5384628
AACACGT650.041.5384641
AAACGGC603.6379788E-1241.2499966
AACGGCT603.6379788E-1241.2499967
ATGAAAC1550.040.645163