Basic Statistics
Measure | Value |
---|---|
Filename | SRR2936521.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 207912 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATGATACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCG | 3000 | 1.4429181576820964 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTC | 2273 | 1.0932509908038017 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC | 2245 | 1.0797837546654354 | No Hit |
GAATGAAACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCG | 717 | 0.344857439686021 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 661 | 0.31792296740928855 | No Hit |
GAACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCT | 556 | 0.26742083189041516 | No Hit |
GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC | 549 | 0.26405402285582363 | No Hit |
GAATGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCT | 543 | 0.2611681865404594 | No Hit |
GAATGAAACGGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC | 490 | 0.23567663242140907 | No Hit |
GAATCTATCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTC | 458 | 0.22028550540613337 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTT | 412 | 0.19816076032167454 | No Hit |
GAATGATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTC | 383 | 0.18421255146408097 | No Hit |
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTA | 226 | 0.1086998345453846 | No Hit |
GAATGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTT | 213 | 0.10244718919542883 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTACGGG | 20 | 7.019945E-4 | 45.000004 | 3 |
GCTACGA | 20 | 7.019945E-4 | 45.000004 | 10 |
CGGGTAT | 25 | 3.8797523E-5 | 45.0 | 6 |
GCGATTG | 25 | 3.8797523E-5 | 45.0 | 9 |
TTGGGTA | 25 | 3.8797523E-5 | 45.0 | 5 |
TTAATCG | 30 | 2.1568994E-6 | 44.999996 | 20 |
AATCGTT | 30 | 2.1568994E-6 | 44.999996 | 22 |
TAATCGT | 30 | 2.1568994E-6 | 44.999996 | 21 |
TGATACC | 335 | 0.0 | 43.656715 | 4 |
TACGGCT | 300 | 0.0 | 42.75 | 7 |
ACGGCTG | 360 | 0.0 | 42.5 | 8 |
GACACGA | 65 | 0.0 | 41.53846 | 25 |
AAACACG | 65 | 0.0 | 41.53846 | 40 |
TCAAGCG | 65 | 0.0 | 41.53846 | 17 |
TGGTCAA | 65 | 0.0 | 41.53846 | 14 |
ACGACCA | 65 | 0.0 | 41.53846 | 28 |
AACACGT | 65 | 0.0 | 41.53846 | 41 |
AAACGGC | 60 | 3.6379788E-12 | 41.249996 | 6 |
AACGGCT | 60 | 3.6379788E-12 | 41.249996 | 7 |
ATGAAAC | 155 | 0.0 | 40.64516 | 3 |