FastQCFastQC Report
Sat 14 Jan 2017
SRR2936520.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936520.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences192791
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCG4760.24689949219621246No Hit
GAATCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCGTCTTC4150.21525901105342052RNA PCR Primer, Index 46 (95% over 23bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGC3620.18776810120804394No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2760.1431602097608291No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAACGGG302.1560754E-645.0000043
AAGGCGA302.1560754E-645.0000046
TGATCGT207.0186664E-445.029
TAAGGAT406.7648216E-945.05
TGCGTTG207.0186664E-445.01
GCGAGAC800.039.37521
ACACGAC800.039.37526
CATGCGG403.4382902E-739.3752
CGCGCAA403.4382902E-739.37518
CACGACC800.039.37527
CGCAATC403.4382902E-739.37520
ACACGTG750.039.042
AGGCGAT750.039.07
TCATGAT356.2212694E-638.5714326
TTACGGG356.2212694E-638.571433
CGTTTTA356.2212694E-638.571431
ATGGGAA1700.038.382355
CATGGGA1300.038.076924
CGGTAGT950.037.89473712
GATCGGG301.13640024E-437.5000043