Basic Statistics
Measure | Value |
---|---|
Filename | SRR2936520.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 192791 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATGATACCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCG | 476 | 0.24689949219621246 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCGTCTTC | 415 | 0.21525901105342052 | RNA PCR Primer, Index 46 (95% over 23bp) |
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGC | 362 | 0.18776810120804394 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 276 | 0.1431602097608291 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAACGGG | 30 | 2.1560754E-6 | 45.000004 | 3 |
AAGGCGA | 30 | 2.1560754E-6 | 45.000004 | 6 |
TGATCGT | 20 | 7.0186664E-4 | 45.0 | 29 |
TAAGGAT | 40 | 6.7648216E-9 | 45.0 | 5 |
TGCGTTG | 20 | 7.0186664E-4 | 45.0 | 1 |
GCGAGAC | 80 | 0.0 | 39.375 | 21 |
ACACGAC | 80 | 0.0 | 39.375 | 26 |
CATGCGG | 40 | 3.4382902E-7 | 39.375 | 2 |
CGCGCAA | 40 | 3.4382902E-7 | 39.375 | 18 |
CACGACC | 80 | 0.0 | 39.375 | 27 |
CGCAATC | 40 | 3.4382902E-7 | 39.375 | 20 |
ACACGTG | 75 | 0.0 | 39.0 | 42 |
AGGCGAT | 75 | 0.0 | 39.0 | 7 |
TCATGAT | 35 | 6.2212694E-6 | 38.57143 | 26 |
TTACGGG | 35 | 6.2212694E-6 | 38.57143 | 3 |
CGTTTTA | 35 | 6.2212694E-6 | 38.57143 | 1 |
ATGGGAA | 170 | 0.0 | 38.38235 | 5 |
CATGGGA | 130 | 0.0 | 38.07692 | 4 |
CGGTAGT | 95 | 0.0 | 37.894737 | 12 |
GATCGGG | 30 | 1.13640024E-4 | 37.500004 | 3 |