SRR2936520.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936520.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	192791
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCG	476	0.24689949219621246	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCGTCTTC	415	0.21525901105342052	RNA PCR Primer, Index 46 (95% over 23bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGC	362	0.18776810120804394	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	276	0.1431602097608291	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGGG	30	2.1560754E-6	45.000004	3
AAGGCGA	30	2.1560754E-6	45.000004	6
TGATCGT	20	7.0186664E-4	45.0	29
TAAGGAT	40	6.7648216E-9	45.0	5
TGCGTTG	20	7.0186664E-4	45.0	1
GCGAGAC	80	0.0	39.375	21
ACACGAC	80	0.0	39.375	26
CATGCGG	40	3.4382902E-7	39.375	2
CGCGCAA	40	3.4382902E-7	39.375	18
CACGACC	80	0.0	39.375	27
CGCAATC	40	3.4382902E-7	39.375	20
ACACGTG	75	0.0	39.0	42
AGGCGAT	75	0.0	39.0	7
TCATGAT	35	6.2212694E-6	38.57143	26
TTACGGG	35	6.2212694E-6	38.57143	3
CGTTTTA	35	6.2212694E-6	38.57143	1
ATGGGAA	170	0.0	38.38235	5
CATGGGA	130	0.0	38.07692	4
CGGTAGT	95	0.0	37.894737	12
GATCGGG	30	1.13640024E-4	37.500004	3