SRR2936515.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936515.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	200641
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTC	685	0.34140579442885555	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCG	641	0.31947607916627213	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGC	421	0.20982750285335497	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	316	0.1574952277949173	No Hit
GCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGC	231	0.11513100512856296	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATGC	20	7.019354E-4	45.0	11
GCGCCAA	20	7.019354E-4	45.0	1
TCGATCA	20	7.019354E-4	45.0	17
CTAACGG	25	3.8792616E-5	45.0	2
GACGGGA	40	6.7666406E-9	45.0	4
GCGATAT	25	3.8792616E-5	45.0	9
TCGTAGG	20	7.019354E-4	45.0	2
TAGGCGA	20	7.019354E-4	45.0	6
CGATCAG	20	7.019354E-4	45.0	18
AATACGG	20	7.019354E-4	45.0	2
TAACGGG	45	1.9146682E-8	40.0	3
TGGGCGA	130	0.0	39.807693	6
CACGAGC	40	3.4392178E-7	39.375	41
ATGCGGG	40	3.4392178E-7	39.375	3
AGGCGAT	75	0.0	39.0	7
GGCGATA	75	0.0	39.0	8
ACACGGG	35	6.222537E-6	38.57143	3
CACGTGA	100	0.0	38.25	43
TGATACC	95	0.0	37.894737	4
ACACGAC	115	0.0	37.173916	26