SRR2936514.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936514.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	69857
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCG	786	1.1251556751649798	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTC	666	0.95337618277338	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGC	629	0.90041083928597	No Hit
GCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	260	0.37218890018179995	Illumina Single End Adapter 1 (95% over 21bp)
GAATGAAACCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCG	199	0.28486765821607	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCT	185	0.26482671743704994	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGC	174	0.24908026396781996	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	148	0.21186137394964	No Hit
GAATCTATCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTC	133	0.19038893740069	No Hit
CCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	133	0.19038893740069	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTC	126	0.18036846701117998	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	101	0.14458107276292997	No Hit
GAACTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCT	100	0.143149576993	No Hit
CTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGCT	86	0.12310863621397998	Illumina Single End Adapter 1 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTT	81	0.11595115736433	No Hit
TCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	78	0.11165667005454	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCTAT	30	2.136254E-6	45.000004	2
TATACTG	30	2.136254E-6	45.000004	18
GGACTAA	30	2.136254E-6	45.000004	8
ATCAGGA	30	2.136254E-6	45.000004	16
GAATCTA	30	2.136254E-6	45.000004	1
TACGAAT	30	2.136254E-6	45.000004	12
CTACGAA	30	2.136254E-6	45.000004	11
ACGGCTG	115	0.0	45.000004	8
GACTATG	30	2.136254E-6	45.000004	24
ACTATGA	30	2.136254E-6	45.000004	25
GACTAAT	30	2.136254E-6	45.000004	9
ACACGAC	20	6.9878285E-4	45.0	26
CCTATGC	25	3.853177E-5	45.0	35
TCAAGCG	20	6.9878285E-4	45.0	17
ACATGGT	20	6.9878285E-4	45.0	11
AAACACG	20	6.9878285E-4	45.0	40
CACGTGA	20	6.9878285E-4	45.0	43
GTCAAGC	20	6.9878285E-4	45.0	16
AGCTACG	25	3.853177E-5	45.0	9
GATGCCA	25	3.853177E-5	45.0	9