SRR2936510.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936510.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	50787
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGC	329	0.64780357178018	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCG	323	0.6359895248784138	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTC	288	0.5670742512847776	Illumina PCR Primer Index 5 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC	143	0.2815681178254278	RNA PCR Primer, Index 33 (96% over 27bp)
CCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC	119	0.23431193021836294	Illumina PCR Primer Index 5 (96% over 25bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	107	0.21068383641483054	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCT	96	0.1890247504282592	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGC	85	0.16736566444168782	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCG	81	0.1594896331738437	No Hit
CTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGCT	75	0.1476755862720775	Illumina PCR Primer Index 5 (96% over 26bp)
GAATCTATCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTC	68	0.13389253155335026	RNA PCR Primer, Index 33 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGAGACC	20	6.969669E-4	45.0	8
ACACGCG	20	6.969669E-4	45.0	36
GTCACTT	20	6.969669E-4	45.0	4
GCAAGAC	20	6.969669E-4	45.0	45
GGCGATT	25	3.838173E-5	45.0	8
TTACACG	20	6.969669E-4	45.0	34
TACACGC	20	6.969669E-4	45.0	35
TAGTAGG	20	6.969669E-4	45.0	2
GAGTACC	20	6.969669E-4	45.0	30
CGGGAAT	20	6.969669E-4	45.0	6
GTCTTAC	20	6.969669E-4	45.0	31
ACAAGCG	25	3.838173E-5	45.0	14
CGAGATA	20	6.969669E-4	45.0	19
CTGTCAC	20	6.969669E-4	45.0	2
TGACGGG	25	3.838173E-5	45.0	3
CAAGCGA	20	6.969669E-4	45.0	15
GCGAGAT	20	6.969669E-4	45.0	18
GTCGGGA	25	3.838173E-5	45.0	4
GGGCGAT	65	0.0	41.53846	7
AGAGCTA	100	0.0	40.5	45