SRR2936508.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936508.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	86409
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

$Per sequence GC content graph$

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCG	329	0.3807473758520525	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTC	298	0.34487148329456424	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGC	282	0.3263548935874735	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	165	0.1909523313543728	No Hit
GCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	102	0.1180432593827032	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGGATT	25	3.860828E-5	45.000004	6
AGTACGG	25	3.860828E-5	45.000004	2
ATGGGCG	20	6.9970835E-4	45.0	5
AACCGGG	20	6.9970835E-4	45.0	3
TACGGTT	20	6.9970835E-4	45.0	33
GGCTTAA	20	6.9970835E-4	45.0	8
TCTCGTA	20	6.9970835E-4	45.0	28
AGCGCGG	20	6.9970835E-4	45.0	2
GCGATGA	20	6.9970835E-4	45.0	9
CGTACGG	20	6.9970835E-4	45.0	31
TCGTACG	20	6.9970835E-4	45.0	30
CGATGTG	20	6.9970835E-4	45.0	10
GCAATGA	20	6.9970835E-4	45.0	1
AGAGCGG	20	6.9970835E-4	45.0	2
GAAGGAT	50	1.0568328E-9	40.500004	5
TACGGCT	45	1.8930223E-8	40.0	7
GGAACAT	40	3.4089862E-7	39.375	8
CGGGTTT	30	1.13120725E-4	37.499996	21
ATGGGAC	30	1.13120725E-4	37.499996	5
AGAACGC	30	1.13120725E-4	37.499996	34