SRR2936505.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936505.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	154597
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	279	0.180469219971927	No Hit
CCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGC	251	0.16235761366650064	TruSeq Adapter, Index 16 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGC	199	0.12872177338499455	TruSeq Adapter, Index 16 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCAGGA	25	3.8750997E-5	45.000004	4
GGCATAT	25	3.8750997E-5	45.000004	8
GGAATCC	40	6.7484507E-9	45.0	8
TGAACCG	20	7.0143293E-4	45.0	1
TAGGGCG	35	1.202825E-7	45.0	5
AAACACG	20	7.0143293E-4	45.0	40
CGAGACA	20	7.0143293E-4	45.0	22
CACCGGG	20	7.0143293E-4	45.0	3
GGCGATT	70	0.0	41.785713	8
AGGCGAT	55	6.002665E-11	40.909092	7
GTAAGGA	45	1.909757E-8	40.000004	4
GTAGGGT	40	3.4323966E-7	39.375	4
CGGGCAC	40	3.4323966E-7	39.375	6
CGGTAGG	40	3.4323966E-7	39.375	31
GTGTAAG	35	6.213264E-6	38.571426	1
CGTTTTA	35	6.213264E-6	38.571426	1
GACCGAT	90	0.0	37.500004	9
GGGACCG	90	0.0	37.500004	7
ATCCTGC	30	1.13535636E-4	37.499996	20
GGCACCG	30	1.13535636E-4	37.499996	8