SRR2936501.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936501.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	227546
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	823	0.3616851098239477	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCG	490	0.21534107389275134	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTC	439	0.1929280233447303	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGC	436	0.19160960860661141	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTACGAA	40	6.7739165E-9	45.000004	11
TACGAAT	45	3.8198777E-10	45.000004	12
CGCTACG	20	7.0213474E-4	45.000004	22
GCGATTC	20	7.0213474E-4	45.000004	9
CGTTTTA	85	0.0	42.35294	1
ATAACGT	50	1.0732037E-9	40.500004	31
GGCGATT	95	0.0	40.263157	8
CGAATAT	45	1.9166691E-8	40.000004	14
AAGGGCG	75	0.0	39.0	5
CGTTTTT	375	0.0	39.0	1
GACACGA	35	6.2262206E-6	38.57143	25
CGGGATC	70	0.0	38.57143	6
TACAGTG	35	6.2262206E-6	38.57143	29
TGACGGG	65	9.094947E-12	38.07692	3
CAACGGA	30	1.13704584E-4	37.500004	37
CGACGCG	30	1.13704584E-4	37.500004	15
TTCGGGC	30	1.13704584E-4	37.500004	4
CGCAATC	30	1.13704584E-4	37.500004	20
GTAAGCG	30	1.13704584E-4	37.500004	1
TAAGCGG	30	1.13704584E-4	37.500004	2