SRR2936500.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936500.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	85225
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTC	481	0.5643883836902317	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCG	443	0.5198005280140804	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGC	397	0.46582575535347615	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	121	0.14197711938985041	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTT	119	0.13963039014373715	No Hit
GCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	117	0.13728366089762392	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTC	105	0.12320328542094457	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCG	98	0.11498973305954827	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGC	97	0.11381636843649165	No Hit
GAATCTATCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTC	92	0.10794954532120857	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCT	91	0.10677618069815195	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTT	88	0.1032560868289821	No Hit
GAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT	86	0.10090935758286887	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTATC	20	6.9965323E-4	45.000004	3
GGGCTAT	20	6.9965323E-4	45.000004	7
CTAAGGG	25	3.8603725E-5	45.000004	3
AGATTAT	20	6.9965323E-4	45.000004	16
TCGAGGG	20	6.9965323E-4	45.000004	3
GGCGATC	20	6.9965323E-4	45.000004	8
GGGGCGA	25	3.8603725E-5	45.000004	6
TGAAACG	35	1.194312E-7	45.0	4
GGCGATA	35	1.194312E-7	45.0	8
GTCTTAC	100	0.0	42.750004	31
TTACACG	100	0.0	42.750004	34
ATGTCTT	105	0.0	40.714287	29
TACACGC	105	0.0	40.714287	35
ACACGCG	110	0.0	38.863632	36
CATGGGA	35	6.180464E-6	38.571426	4
GGACTGC	35	6.180464E-6	38.571426	8
GTGCTTG	35	6.180464E-6	38.571426	1
GGGCGAT	140	0.0	38.571426	7
CGAGGGC	35	6.180464E-6	38.571426	4
GGCGACT	35	6.180464E-6	38.571426	10