FastQCFastQC Report
Sat 14 Jan 2017
SRR2936495.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936495.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences151848
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2860.18834624097781993No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGGACG207.0139323E-445.01
TACGGGA253.8747727E-545.04
GCGATCT406.7484507E-945.09
GCGATAC207.0139323E-445.09
GTGAGCG207.0139323E-445.01
AGGATAC253.8747727E-545.07
CCCGGGA253.8747727E-545.04
CGTTTTA302.1530286E-644.9999961
GGCGATC603.6379788E-1241.2499968
TAGGGCG556.002665E-1140.9090925
TAAGGAT451.9093932E-839.9999965
ACGGGAG850.039.7058835
TGGGCGA850.039.7058836
CGCATGG403.431851E-739.3752
GGGCGAT2550.038.823537
ACAACGA356.212531E-638.5714313
TAGGTAT356.212531E-638.571436
GGGACGC356.212531E-638.571437
GCCTCCC356.212531E-638.5714342
AACGAGC356.212531E-638.5714315
Produced by FastQC (version 0.11.5)