SRR2936483.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936483.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	894927
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGC	1848	0.20649728972307238	TruSeq Adapter, Index 20 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGC	1797	0.20079850088331225	TruSeq Adapter, Index 20 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1670	0.18660739926273318	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1282	0.14325190769749935	No Hit
CTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGCT	1149	0.1283903603310661	TruSeq Adapter, Index 23 (95% over 23bp)
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	1026	0.11464622254105641	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACCG	20	7.0324476E-4	45.000004	30
TAATGCG	40	6.8121153E-9	45.000004	1
TACCGGA	20	7.0324476E-4	45.000004	26
GCGTACG	25	3.890112E-5	45.0	1
ACCGAAC	65	0.0	41.53846	22
CGGTCTA	55	6.002665E-11	40.909092	31
CGACGTT	50	1.0804797E-9	40.5	27
ACTTACG	45	1.9274012E-8	40.0	1
CTAACGG	45	1.9274012E-8	40.0	2
GCGCGAC	125	0.0	39.600002	9
ACGTTAG	35	6.2467407E-6	38.571426	1
TCGATTA	35	6.2467407E-6	38.571426	41
TAACGCG	35	6.2467407E-6	38.571426	1
ATTCCGA	35	6.2467407E-6	38.571426	12
CCGAACT	70	0.0	38.571426	23
CGTTAGG	135	0.0	38.333336	2
CGTATGG	100	0.0	38.25	2
GACGGTC	65	9.094947E-12	38.07692	29
CCGACTA	65	9.094947E-12	38.07692	41
GTTCGCG	30	1.13972E-4	37.499996	1