FastQCFastQC Report
Sat 14 Jan 2017
SRR2936483.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936483.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences894927
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGC18480.20649728972307238TruSeq Adapter, Index 20 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGC17970.20079850088331225TruSeq Adapter, Index 20 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT16700.18660739926273318No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG12820.14325190769749935No Hit
CTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGCT11490.1283903603310661TruSeq Adapter, Index 23 (95% over 23bp)
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA10260.11464622254105641No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTACCG207.0324476E-445.00000430
TAATGCG406.8121153E-945.0000041
TACCGGA207.0324476E-445.00000426
GCGTACG253.890112E-545.01
ACCGAAC650.041.5384622
CGGTCTA556.002665E-1140.90909231
CGACGTT501.0804797E-940.527
ACTTACG451.9274012E-840.01
CTAACGG451.9274012E-840.02
GCGCGAC1250.039.6000029
ACGTTAG356.2467407E-638.5714261
TCGATTA356.2467407E-638.57142641
TAACGCG356.2467407E-638.5714261
ATTCCGA356.2467407E-638.57142612
CCGAACT700.038.57142623
CGTTAGG1350.038.3333362
CGTATGG1000.038.252
GACGGTC659.094947E-1238.0769229
CCGACTA659.094947E-1238.0769241
GTTCGCG301.13972E-437.4999961