Basic Statistics
Measure | Value |
---|---|
Filename | SRR2936483.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 894927 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGC | 1848 | 0.20649728972307238 | TruSeq Adapter, Index 20 (95% over 22bp) |
GCTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGC | 1797 | 0.20079850088331225 | TruSeq Adapter, Index 20 (95% over 22bp) |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1670 | 0.18660739926273318 | No Hit |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG | 1282 | 0.14325190769749935 | No Hit |
CTGTCTCTTATACACATCTGACGCTCCGCTTTTCGTATGCCGTCTTCTGCT | 1149 | 0.1283903603310661 | TruSeq Adapter, Index 23 (95% over 23bp) |
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA | 1026 | 0.11464622254105641 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATTACCG | 20 | 7.0324476E-4 | 45.000004 | 30 |
TAATGCG | 40 | 6.8121153E-9 | 45.000004 | 1 |
TACCGGA | 20 | 7.0324476E-4 | 45.000004 | 26 |
GCGTACG | 25 | 3.890112E-5 | 45.0 | 1 |
ACCGAAC | 65 | 0.0 | 41.53846 | 22 |
CGGTCTA | 55 | 6.002665E-11 | 40.909092 | 31 |
CGACGTT | 50 | 1.0804797E-9 | 40.5 | 27 |
ACTTACG | 45 | 1.9274012E-8 | 40.0 | 1 |
CTAACGG | 45 | 1.9274012E-8 | 40.0 | 2 |
GCGCGAC | 125 | 0.0 | 39.600002 | 9 |
ACGTTAG | 35 | 6.2467407E-6 | 38.571426 | 1 |
TCGATTA | 35 | 6.2467407E-6 | 38.571426 | 41 |
TAACGCG | 35 | 6.2467407E-6 | 38.571426 | 1 |
ATTCCGA | 35 | 6.2467407E-6 | 38.571426 | 12 |
CCGAACT | 70 | 0.0 | 38.571426 | 23 |
CGTTAGG | 135 | 0.0 | 38.333336 | 2 |
CGTATGG | 100 | 0.0 | 38.25 | 2 |
GACGGTC | 65 | 9.094947E-12 | 38.07692 | 29 |
CCGACTA | 65 | 9.094947E-12 | 38.07692 | 41 |
GTTCGCG | 30 | 1.13972E-4 | 37.499996 | 1 |