FastQCFastQC Report
Sat 14 Jan 2017
SRR2936480.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936480.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388916
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGC101672.614189182239867No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCG89472.300496765368357No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTC83422.1449361815919117No Hit
GCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC29140.7492620514455564TruSeq Adapter, Index 14 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCT17610.45279700500879366No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTT17050.4383980088245277No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTAAGACT15560.40008639397710555No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTA14250.36640302790319756No Hit
GAACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCT13530.3478900328091413No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTC11470.2949222968455913No Hit
CCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC9960.2560964321344455TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8980.23089818881198No Hit
CTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGCT8890.22858406442522292TruSeq Adapter, Index 15 (95% over 23bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG6750.1735593290067778No Hit
TCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC4610.1185345935883327TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATG4310.1108208456324759No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCGTAG302.1617834E-645.0000041
CGGGATA351.209155E-745.0000046
GCGTGAA302.1617834E-645.00000436
CGGTAGT600.045.00000412
TCGACGT302.1617834E-645.00000426
TCACGAC253.8860293E-545.025
AACGTTA207.027524E-445.045
GAATCCC253.8860293E-545.08
CGTCTCG207.027524E-445.042
TTGTACG207.027524E-445.01
ACGGGTA406.7957444E-945.05
CGTTCAT253.8860293E-545.017
ACGGGCT406.7957444E-945.05
CGCCTTA207.027524E-445.011
CGGGGTA207.027524E-445.06
ACTAGGA207.027524E-445.032
AGTGCCG207.027524E-445.038
ATGACCG207.027524E-445.01
CCGACTA207.027524E-445.042
CGGTCTA207.027524E-445.031