Basic Statistics
Measure | Value |
---|---|
Filename | SRR2936480.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 388916 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGC | 10167 | 2.614189182239867 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCG | 8947 | 2.300496765368357 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTC | 8342 | 2.1449361815919117 | No Hit |
GCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC | 2914 | 0.7492620514455564 | TruSeq Adapter, Index 14 (95% over 21bp) |
GAATGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCT | 1761 | 0.45279700500879366 | No Hit |
GAATGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTT | 1705 | 0.4383980088245277 | No Hit |
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTAAGACT | 1556 | 0.40008639397710555 | No Hit |
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTA | 1425 | 0.36640302790319756 | No Hit |
GAACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCT | 1353 | 0.3478900328091413 | No Hit |
GAATGATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTC | 1147 | 0.2949222968455913 | No Hit |
CCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC | 996 | 0.2560964321344455 | TruSeq Adapter, Index 14 (95% over 21bp) |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 898 | 0.23089818881198 | No Hit |
CTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGCT | 889 | 0.22858406442522292 | TruSeq Adapter, Index 15 (95% over 23bp) |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG | 675 | 0.1735593290067778 | No Hit |
TCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC | 461 | 0.1185345935883327 | TruSeq Adapter, Index 14 (95% over 21bp) |
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATG | 431 | 0.1108208456324759 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTCGTAG | 30 | 2.1617834E-6 | 45.000004 | 1 |
CGGGATA | 35 | 1.209155E-7 | 45.000004 | 6 |
GCGTGAA | 30 | 2.1617834E-6 | 45.000004 | 36 |
CGGTAGT | 60 | 0.0 | 45.000004 | 12 |
TCGACGT | 30 | 2.1617834E-6 | 45.000004 | 26 |
TCACGAC | 25 | 3.8860293E-5 | 45.0 | 25 |
AACGTTA | 20 | 7.027524E-4 | 45.0 | 45 |
GAATCCC | 25 | 3.8860293E-5 | 45.0 | 8 |
CGTCTCG | 20 | 7.027524E-4 | 45.0 | 42 |
TTGTACG | 20 | 7.027524E-4 | 45.0 | 1 |
ACGGGTA | 40 | 6.7957444E-9 | 45.0 | 5 |
CGTTCAT | 25 | 3.8860293E-5 | 45.0 | 17 |
ACGGGCT | 40 | 6.7957444E-9 | 45.0 | 5 |
CGCCTTA | 20 | 7.027524E-4 | 45.0 | 11 |
CGGGGTA | 20 | 7.027524E-4 | 45.0 | 6 |
ACTAGGA | 20 | 7.027524E-4 | 45.0 | 32 |
AGTGCCG | 20 | 7.027524E-4 | 45.0 | 38 |
ATGACCG | 20 | 7.027524E-4 | 45.0 | 1 |
CCGACTA | 20 | 7.027524E-4 | 45.0 | 42 |
CGGTCTA | 20 | 7.027524E-4 | 45.0 | 31 |