SRR2936480.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936480.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	388916
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGC	10167	2.614189182239867	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCG	8947	2.300496765368357	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTC	8342	2.1449361815919117	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	2914	0.7492620514455564	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCT	1761	0.45279700500879366	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTT	1705	0.4383980088245277	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTAAGACT	1556	0.40008639397710555	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTA	1425	0.36640302790319756	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCT	1353	0.3478900328091413	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTC	1147	0.2949222968455913	No Hit
CCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	996	0.2560964321344455	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	898	0.23089818881198	No Hit
CTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGCT	889	0.22858406442522292	TruSeq Adapter, Index 15 (95% over 23bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	675	0.1735593290067778	No Hit
TCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	461	0.1185345935883327	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATG	431	0.1108208456324759	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGTAG	30	2.1617834E-6	45.000004	1
CGGGATA	35	1.209155E-7	45.000004	6
GCGTGAA	30	2.1617834E-6	45.000004	36
CGGTAGT	60	0.0	45.000004	12
TCGACGT	30	2.1617834E-6	45.000004	26
TCACGAC	25	3.8860293E-5	45.0	25
AACGTTA	20	7.027524E-4	45.0	45
GAATCCC	25	3.8860293E-5	45.0	8
CGTCTCG	20	7.027524E-4	45.0	42
TTGTACG	20	7.027524E-4	45.0	1
ACGGGTA	40	6.7957444E-9	45.0	5
CGTTCAT	25	3.8860293E-5	45.0	17
ACGGGCT	40	6.7957444E-9	45.0	5
CGCCTTA	20	7.027524E-4	45.0	11
CGGGGTA	20	7.027524E-4	45.0	6
ACTAGGA	20	7.027524E-4	45.0	32
AGTGCCG	20	7.027524E-4	45.0	38
ATGACCG	20	7.027524E-4	45.0	1
CCGACTA	20	7.027524E-4	45.0	42
CGGTCTA	20	7.027524E-4	45.0	31